RNA id: XR_005036247.1



Basic Information


Item Value
RNA id XR_005036247.1
length 1273
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC110490866
representative False

Chromosome Information


Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 77672463 ~ 77673862 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tctctccccctcttcatcctctctctctctcttcatcctctctccctctcttcatcctctctgtctcttcatcctctctccctctcctcctctcctcccttgctGGTCACAGGTCATATCTACCTTTACCTCAGAGCTCTCCAGCACTTAGAACTAGGAAAATTAGGGACTTCAATGCTGGTTCAGTGTAGCAACCTTGTGAAACAACCACAAAGTCTTGGCATGGCCCCTCCTTTGTCCTTGTGTGGATGAATTAAGGAGCGAGATGTCATTACTTATAAAGCGAATTGCTCATGGAAATCTAAAAATGTAATCAACCTTCTTTGCCATTCCTGAAAACTCTGCTGCTCGTGGTCTGTCAAAAACCTTGCTGTCTGTGAGTTAGTTTTCTGCtttaggctgtctgtctgtgagttagttctctctctctctctctctctctctctctctctctctctcaacaaaaCACAAACTCGCTGTAATGAACCTTCCTGTGGCCATTCCTCCATGTGACATGCTGAAGATagagagcagagaaggagagacatCCTTGTCTCAGGGTCTTTCCTAGGTGTGTGACATGGTTAAAAAAGAGAGGTGGATAGGCTGaatctgggtcgtgttcattagggcacaccgtagcaaaactgTTTTTACTTTCTTGCAACAGAGGTGGATGGGCTGaatctgggttgtgttcatttggCCACAAAGTAGCCAAATGTTTCTGTTACAAACTACCAGATACTGGGGTAGCTGTATGAGTCCACTGTCAAATGTGACACATCCTCTTTCTTTTCTTCctcttgtttttctctctctccatcgttaCCCAGATTCAGAATTTGGAGgcaaaagctatttttttattaTCTTGAGCTCTTAAAATACCAgaattgtataaaaaaaaatatatagatgagTATTTATACCAAAAGTATATTATGTAAAGTAAAGGGTCCCTGAGGAGGAGGTCTGATGGAGGCCTGGCGCATGCTCTGCAGATTGTAGGTAGTAGGCCTAGCTAGCCAGGTTGAGCTAGCCTAGCGTCCCGTTGGCTAGCCAGGTTTAGCTAGCCTAGCGTCCCGTTGGCTAGCCAGCTTTAGCTAGCCTAGCGTCCCGTTGGCTAGCCAGGTTTAGCTAGCCTAGCGTCCCGTTGGCTAGAGGCTGTGTGTACATTACATTCATAGGGCCAGTGAATAGAATGCATATTTTGTTTTTATATCAGAGTGTTAAATCCGTGTAATATGTAATAAACAACTTTACCAAATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1516913 lncRNA downstream 23495 77648745 ~ 77648975 (-) True G1327991
TU1516911 lncRNA downstream 23836 77648404 ~ 77648634 (-) True G1327989
TU1516907 lncRNA downstream 26264 77645944 ~ 77646206 (-) True G1327985
TU1516899 lncRNA downstream 32609 77639465 ~ 77639861 (-) True G1327977
TU1516892 lncRNA downstream 38071 77634145 ~ 77634399 (-) True G1327970
TU1516978 lncRNA upstream 347 77674209 ~ 77674727 (-) True G1328045
TU1516984 lncRNA upstream 1621 77675483 ~ 77675798 (-) True LOC110490687
TU1517011 lncRNA upstream 106569 77780431 ~ 77781694 (-) True G1328073
TU1517027 lncRNA upstream 139159 77813021 ~ 77813310 (-) True G1328089
TU1517029 lncRNA upstream 146902 77820764 ~ 77821245 (-) True G1328091
XM_036945430.1 mRNA downstream 62984 77583866 ~ 77609486 (-) True LOC110511982
XM_036945431.1 mRNA downstream 66449 77601746 ~ 77606021 (-) True LOC110499734
trnak-cuu-19 mRNA downstream 74146 77598252 ~ 77598324 (-) False trnak-cuu-19
trnak-cuu-18 mRNA downstream 76583 77595815 ~ 77595887 (-) True trnak-cuu-18
trnak-cuu-17 mRNA downstream 77510 77594888 ~ 77594960 (-) True trnak-cuu-17
XM_036945432.1 mRNA upstream 1583 77675445 ~ 77794866 (-) False LOC110490687
XR_005036250.1 mRNA upstream 350581 78024443 ~ 78024930 (-) True LOC118938863
XM_036945435.1 mRNA upstream 475111 78148973 ~ 78157083 (-) True LOC118938864
XM_036945436.1 mRNA upstream 485929 78159791 ~ 78194251 (-) True LOC118938865
XM_036945438.1 mRNA upstream 625470 78299332 ~ 78452504 (-) False LOC118938867
TU1516814 other downstream 165696 77502020 ~ 77506774 (-) True LOC110515635
TU1516806 other downstream 172766 77448268 ~ 77499704 (-) False LOC110515635
TU1516813 other downstream 243321 77418321 ~ 77429149 (-) False LOC110515635
TU1515635 other downstream 1673470 75998506 ~ 75999000 (-) True G1326996
TU1514494 other downstream 2619113 75052749 ~ 75053357 (-) True G1326164
TU1517067 other upstream 197417 77871279 ~ 77874604 (-) True G1328123
TU1517575 other upstream 624714 78298576 ~ 78300855 (-) False LOC118938867
TU1517636 other upstream 627806 78301668 ~ 78302580 (-) False LOC118938867
TU1518138 other upstream 1089237 78763099 ~ 78766048 (-) False G1328815
TU1518205 other upstream 1196463 78870325 ~ 78871031 (-) True G1328861

Expression Profile