RNA id: XM_036945456.1



Basic Information


Item Value
RNA id XM_036945456.1
length 1554
RNA type mRNA
GC content 0.54
exon number 12
gene id LOC110510817
representative False

Chromosome Information


Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 78649574 ~ 78658219 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACCCACTAGTGTAGAGAGGAGGATATGGTCTGGTTGCTGTTCTGCAGTACCTTATTAtttcctcatctcttctccttacATCACCTCatttcactcctcctcctcaacagTGACTAATCCAAGCCAGAAGCAGTAGCCAGCTCAGGTCGGTTGGCAGAATGTCTCTGCTGCTTTGTTGTATAGTGATGGCTCTGCACCTCTCAACAGGAGGAGGTACAAAGCCATAAAACTTACGTTTTTCCAGCATCAGACTATGAATGATAACGTCAAAGGCCACACTgatgtctaacaaaacagcccccacaatcttttgaTCATGAATTTCACTCGGCCAATCATCAACCATCTGTGGCTGGATGCTGCCCCGGGGGTGGTGAACActacagaggaggaggtggaaggggtGGACTCCCAGTCACCATGCCCAGCCGGGTGGCATCAGAATGAGCATCGCTGCTTCTCCTTCTGCCCCGTCTGGGCCACCTGGGCcactgcagagtTGTACTGCTCCCAGCACAGAGGGAACCTGGTGTCGGTTCACAGCCCGGGTCAACAGGTGTTTGTCCAGGATCTGGTCAGGAGACACACAGACCAGCCGGTCTGGATAGGAGGCTACGATGCAGCTCAGGAGGGGATGTGGCTGTGGAGTGACGGCTCAGCTGTTGACAGTTTCTACTGGGAGGAGGATGAGCCCAGTAACTCTGGACAGGGGGAGAACTGTATGGAGCTACACACTGgagGTGGGCAGGGCTGGAATGACGTGTCCTGTGCAGAGCTGAGGTTCTATGTGTGTTCTATGgagacaagATCTGGTTTAGCATCATTGCCAAGTCAGAAGAAAAAACACGAGAGAGagcTGGTTGAAGAGGTGAGTATTTATGACGTCCTGTGGGAGACCAGTGAGAGAGTAGCAGATGAGATCCTCGACACAGCCTTCCTCAGGGGGATGTATTCCAGACGTCTGCCTGCCCGCTGCTATGCTGACTTCTGCCACCAGGAGGTGCTATACCTGGACAGAGTCACCACCATGCTGCAGGTGCTGATCAGAACAGTCCAGGGTCCTCCAGACATCATGATGTTTCTCCGGAGAACACATCAACGCTACCAGGAGTCTATGAAGGAGGCCCAGATCCAAACTCCACCACACCTGAACCTGTCCTCCATCCAGCCCTCTGCAGCTGTGCGTCAGTACCTCCAGAGCTTCCATGAAATTGTGAATGAGGAGCCCATCTACTGGCTGGTGTCTCTGCTGCCCAGAGCCCTGCTCAGACCTTACCTGGCACAGAACCTGCCCCTGGGAGAGAGGACCAGACAAggccccagcccctgcctctaccCCTGGCTAAacctcttcccctgcccctgctaccagtgggggagagaggacatgaaGCCAGACCAGAGGAACTAGAAGGATGAGTCTGGGACATATTACAGgcatcTACTGGAGAAGTACCAGGATGTGATAGACGTCTACAAGGCTGTCAACATCTTCAGAGTCCAGATGATCAACGAGAAggctctcttcaccaccaggtGCGGTTAGCCTGACTT

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU1517810 lncRNA upstream 16845 78631542 ~ 78632729 (+) False G1328596
TU1517811 lncRNA upstream 16845 78631542 ~ 78632729 (+) True G1328596
TU1517796 lncRNA upstream 34547 78614189 ~ 78615027 (+) True G1328583
TU1517772 lncRNA upstream 62831 78565910 ~ 78586743 (+) True G1328561
TU1517758 lncRNA upstream 76064 78571404 ~ 78573510 (+) True G1328548
TU1517849 lncRNA downstream 41564 78699783 ~ 78742133 (+) False G1328632
TU1517850 lncRNA downstream 41564 78699783 ~ 78742133 (+) False G1328632
TU1517851 lncRNA downstream 41564 78699783 ~ 78745994 (+) False G1328632
TU1517852 lncRNA downstream 68481 78726700 ~ 78745994 (+) True G1328632
TU1518000 lncRNA downstream 88273 78746492 ~ 78746705 (+) True G1328753
XM_036945445.1 mRNA upstream 103414 78525988 ~ 78546160 (+) False LOC110507940
XM_036945446.1 mRNA upstream 103414 78526013 ~ 78546160 (+) True LOC110507940
trnaa-ugc-124 mRNA upstream 117034 78532470 ~ 78532540 (+) True trnaa-ugc-124
XM_036945442.1 mRNA upstream 133064 78471597 ~ 78516510 (+) False LOC118938868
XM_036945465.1 mRNA downstream 91111 78749330 ~ 78763876 (+) False LOC118936267
XM_036945462.1 mRNA downstream 91111 78749330 ~ 78763988 (+) False LOC118936267
XM_036945464.1 mRNA downstream 91438 78749657 ~ 78763988 (+) False LOC118936267
XM_036945468.1 mRNA downstream 121982 78780201 ~ 78823285 (+) False LOC118938871
XM_036945466.1 mRNA downstream 121999 78780218 ~ 78826735 (+) False LOC118938871
TU1517192 other upstream 579171 78070029 ~ 78070403 (+) True G1328201
TU1517133 other upstream 631763 77959066 ~ 78017811 (+) False LOC110490691
TU1517137 other upstream 667901 77959066 ~ 77981673 (+) True LOC110490691
TU1516094 other upstream 1836286 76809860 ~ 76813288 (+) True G1327379
TU1515923 other upstream 2059689 76587574 ~ 76589885 (+) False G1327230
TU1518030 other downstream 91159 78749378 ~ 78763940 (+) False LOC118936267
TU1518031 other downstream 91159 78749378 ~ 78763940 (+) False LOC118936267
TU1518032 other downstream 91159 78749378 ~ 78763940 (+) False LOC118936267
TU1518033 other downstream 91159 78749378 ~ 78763940 (+) False LOC118936267
TU1518034 other downstream 91159 78749378 ~ 78763940 (+) False LOC118936267

Expression Profile


XM_036945456.1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.25.
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XM_036945456.1 Expression in each Bioproject

Bar chart with 8 bars.
XM_036945456.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 4.
End of interactive chart.