RNA id: XR_005036254.1


Basic Information

Item Value
RNA id XR_005036254.1
length 1222
RNA type mRNA
GC content 0.51
exon number 2
gene id LOC118938876
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 79667754 ~ 79691305 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCACCACCCCCATATCACCTGAACCCCCTCCCCATATCACCTGAACCCCCTCCCCATATCACCTGAACCCCCTCCAACCCCTTTCTACCAGTCATGCTGTGGTGCATCTCAGCTAAAAGAGGTGGAATCATAGAACCTTTGGAATAGATTCTGACAGACGTCACTGCGTCACGAGCGTACGGATGACTGACTCAGCTCCCCCCCGTTGGTTGGATTTACCAGGGGAGGGGGCGGGGACCTGCTGCAGATGACAGATGCAGAAGCCAATCAGGTTGGAATCAATAGCAAAAAAAACCGACATAGACCAACAGACCCTTGGATGATAAAACAGGGCGGCCAACTGCTCAGACGCCCGGACTACAACGTCTCCTGGAATTATGACGTGGGACGATGGCCGCTGCAGGAGAGACAGTCACGTGGAGGTTGGTGGAAGATGAGCAGTCCTTCTGCTGTATGACAGCTTCCTAAAACACCCCGCGGTTTCCCATCCCACGACCCCTGGAGACCTCCCACGACCCCTGGAGACCTCCCACGACCCCTGGAGACCTCCCACGACCCCTGGAGACCTCCTCAACAAGGAGAAAAACACCATCGCTGTCTTTTACCTCTGAGACGAGGAACGGATGAAATACACAATGGATTAGATGAGGAAAACCCCTGACTCACTGGAGGACAGGGCTCTGACATGCCTTTCCATTagggacaacatcactgacaggatatagaatacaccatgGATTAGATGAGGAAACCCCTGACTCACTGGAGGACAGGGCTCTGACATGCCTTTCCATTAGGGACAACATCacctgacaggatatagaatacacatGGACAACATCacctgacaggatatagaatacacatGGATTAGATGAGGAAACCCCTGACTCACTGGAGGACAGGGCTCTGACATGCCTTTCCATTAGGGACAACATCacctgacaggatatagaatacacatGGACAACATCacctgacaggatatagaatacacatGGATTAGATGAGGAAACCCCTGACTCACTGGAGGACAGGGCTCTGACATGCCTTTCCATTagggacaacatcactgacaggatatagaatacaccatgGATTAGATGAGGAAACCCCTGACTCACTGGAGGACAGGGCTCTGACATGCCTTTCCATTAGGGACAACATCacctgacaggatatagaatacacatGGACAACATCacctgacaggatatagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1519001 lncRNA downstream 2663 79667754 ~ 79669380 (-) False LOC118938876
TU1519004 lncRNA downstream 59602 79609180 ~ 79612441 (-) True LOC118938874
TU1519035 lncRNA downstream 64468 79605318 ~ 79607575 (-) False G1329494
TU1519033 lncRNA downstream 64468 79606354 ~ 79607575 (-) True G1329494
TU1519032 lncRNA downstream 65254 79605318 ~ 79606789 (-) False G1329494
TU1519075 lncRNA upstream 28256 79719561 ~ 79720143 (-) False G1329527
TU1519074 lncRNA upstream 28459 79719764 ~ 79721145 (-) True G1329527
TU1519036 lncRNA upstream 30197 79721502 ~ 79751236 (-) True G1329495
TU1519078 lncRNA upstream 33054 79724359 ~ 79725951 (-) True G1329528
TU1519086 lncRNA upstream 55693 79746998 ~ 79749396 (-) True G1329534
XM_036945476.1 mRNA downstream 48617 79618502 ~ 79623426 (-) True LOC110513674
XR_005036252.1 mRNA downstream 59172 79609546 ~ 79612871 (-) False LOC118938874
XM_021622541.2 mRNA downstream 182915 79487003 ~ 79489128 (-) True LOC110536863
XM_036945474.1 mRNA downstream 332038 79307180 ~ 79340005 (-) False LOC118938873
XM_036945473.1 mRNA downstream 332466 79307180 ~ 79339577 (-) False LOC118938873
XM_036945477.1 mRNA upstream 313 79691618 ~ 79695469 (-) True LOC118938877
XM_036945486.1 mRNA upstream 219377 79910682 ~ 79978629 (-) False LOC110510401
XM_036945483.1 mRNA upstream 219377 79910682 ~ 80084406 (-) False LOC110510401
XM_036945484.1 mRNA upstream 219377 79910682 ~ 80084406 (-) False LOC110510401
XM_036945485.1 mRNA upstream 219377 79910682 ~ 80084406 (-) False LOC110510401
TU1519000 other downstream 897 79668609 ~ 79671146 (-) False LOC118938876
TU1519017 other downstream 104071 79567334 ~ 79567972 (-) False G1329481
TU1519018 other downstream 104071 79567334 ~ 79567972 (-) True G1329481
TU1519010 other downstream 128890 79542794 ~ 79543153 (-) True G1329475
TU1518390 other downstream 596507 79075290 ~ 79075536 (-) True G1329004
TU1519163 other upstream 188103 79879408 ~ 79880360 (-) False G1329577
TU1519164 other upstream 188103 79879408 ~ 79880360 (-) False G1329577
TU1519165 other upstream 188103 79879408 ~ 79880360 (-) True G1329577
TU1519138 other upstream 219737 79911042 ~ 79914052 (-) False LOC110510401
TU1519140 other upstream 248881 79940186 ~ 79957109 (-) False LOC110510401

Expression Profile