RNA id: TU1519001


Basic Information

Item Value
RNA id TU1519001
length 1323
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id LOC118938876
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 79667754 ~ 79691305 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atacacctggacaacatcacctgacaggatatagaatacacctggacaacatcactgacaggatatagaatacacctggacaacatcactgacaggatatagaatacaccacatGGACAATGTGTCTGACACAGATTTAACTGTGTGGACAACATTACTGACAGAGATTCAAACCAGGTGGACATCAATCTGTCTGATATAGACAGGAGACAGCAGCACTGATCTGATgacctgcagagaggagaggagacaaacagacagagatttAAACCAGGTGGACATCAATCTGTCTGATATGGACAGGAGACAGCCTCACTGCTCTGATgacctgcagagaggagaggagacaaacagacagaggtacAGGAGACGTTACTTGAATCACCTTCCACAACACATGAATAATGACATGTGTAAACCCACTGATCGTGGTACCCTTTGTTTGATGTGTGTCAACATGACCCCGGGACAACACACTCCTTCTAAGGCTGAGAAACAGGTGTGTGAAAATGTATGACAGATAATGACGACTatacgaggggggggggggggggggggggttctctctgTATGTAGACATTGAATAATGTAATGTATAGATATGACATCAATAAGACAATGTTCTGTATGTAGACATCGAATCATATCGTGTTCTGTATAGATATGACATCAATAAGACGATGTTCTGTATGTAGACATCGAATCATATCGTGTTCTGTATAGATATGACATCAATAAGACGATGTTCTGTATGTAGACATCGAATCATATCGTGTTCTGTATAGATATGACATCAATAAGACAATGTTCTGTATGTAGACATCGAATCATATCGTGTTCTGTATAGATATGACATCAATAAGACGAGGTTCTGTATGTAGACATCGAATCATATCGTGTTCTGTATAGATATGACATCAATAAGACGATGTTCTGTATGTAGACATCGAATCATATCGTGTTCTGTATAGATATGACATCAATAAGACGATGTTCTGTATGTAGACATCGAATCATATCGTGTTCTGTATAGATATGACATCAATAAGACGATGTTCTGTATGTAGACATCGAATCATATCATGTTCTGTATAGATATGACATCAATAAGACGATGTTCTGTATGTAGACATCGAATCATATCATGTTCTGGTACTAAAACATATTATTGAAAACATGTACAGCTGGTAAGCCAGAAATAAAGACAGACCGTAGTTTTAATTCTGTGTCAACAAACTGTTCTAAAAAATACCTATCTGTTCTTCTCGGCTCTGTTGAGACTCGTGGAGTTATTGCATTGTTAAATCTCTATTTTTTTAAGGt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1519004 lncRNA downstream 55313 79609180 ~ 79612441 (-) True LOC118938874
TU1519035 lncRNA downstream 60179 79605318 ~ 79607575 (-) False G1329494
TU1519033 lncRNA downstream 60179 79606354 ~ 79607575 (-) True G1329494
TU1519032 lncRNA downstream 60965 79605318 ~ 79606789 (-) False G1329494
TU1519021 lncRNA downstream 62874 79604612 ~ 79604880 (-) True G1329484
TU1519058 lncRNA upstream 6143 79675523 ~ 79679348 (-) True G1329514
TU1519075 lncRNA upstream 50181 79719561 ~ 79720143 (-) False G1329527
TU1519074 lncRNA upstream 50384 79719764 ~ 79721145 (-) True G1329527
TU1519036 lncRNA upstream 52122 79721502 ~ 79751236 (-) True G1329495
TU1519078 lncRNA upstream 54979 79724359 ~ 79725951 (-) True G1329528
XM_036945476.1 mRNA downstream 44328 79618502 ~ 79623426 (-) True LOC110513674
XR_005036252.1 mRNA downstream 54883 79609546 ~ 79612871 (-) False LOC118938874
XM_021622541.2 mRNA downstream 178626 79487003 ~ 79489128 (-) True LOC110536863
XM_036945474.1 mRNA downstream 327749 79307180 ~ 79340005 (-) False LOC118938873
XM_036945473.1 mRNA downstream 328177 79307180 ~ 79339577 (-) False LOC118938873
XR_005036254.1 mRNA upstream 2663 79672043 ~ 79691305 (-) False LOC118938876
XM_036945477.1 mRNA upstream 22238 79691618 ~ 79695469 (-) True LOC118938877
XM_036945486.1 mRNA upstream 241302 79910682 ~ 79978629 (-) False LOC110510401
XM_036945483.1 mRNA upstream 241302 79910682 ~ 80084406 (-) False LOC110510401
XM_036945484.1 mRNA upstream 241302 79910682 ~ 80084406 (-) False LOC110510401
TU1519017 other downstream 99782 79567334 ~ 79567972 (-) False G1329481
TU1519018 other downstream 99782 79567334 ~ 79567972 (-) True G1329481
TU1519010 other downstream 124601 79542794 ~ 79543153 (-) True G1329475
TU1518390 other downstream 592218 79075290 ~ 79075536 (-) True G1329004
TU1518366 other downstream 636798 79029667 ~ 79030956 (-) True G1328987
TU1519163 other upstream 210028 79879408 ~ 79880360 (-) False G1329577
TU1519164 other upstream 210028 79879408 ~ 79880360 (-) False G1329577
TU1519165 other upstream 210028 79879408 ~ 79880360 (-) True G1329577
TU1519138 other upstream 241662 79911042 ~ 79914052 (-) False LOC110510401
TU1519140 other upstream 270806 79940186 ~ 79957109 (-) False LOC110510401

Expression Profile