RNA id: TU1519000


Basic Information

Item Value
RNA id TU1519000
length 656
RNA type TUCP
GC content 0.44
exon number 2
gene id LOC118938876
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 79667754 ~ 79691305 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacaacatcactgacaggatatagaatacacctggacaacaacactgacaggatatagaatacacctggacaacatcactgacaggatatagaatacacctggacaacatcactgacaggatacagaatacacctggacaacatcactgacaggatatagaatacacctggacaacatcactgacaggatacagaatacacctggacaacatcactgacaggatatagaatacaccacatGGACAATGTGTCTGACACAGATTTAACTGTGTGGACAACATTACTGACAGAGATTCAAACCAGGTGGACATCAATCTGTCTGATATAGACAGGAGACAGCAGCACTGATCTGATgacctgcagagaggagaggagacaaacagacagagatttAAACCAGGTGGACATCAATCTGTCTGATATGGACAGGAGACAGCCTCACTGCTCTGATgacctgcagagaggagaggagacaaacagacagaggtacAGGAGACGTTACTTGAATCACCTTCCACAACACATGAATAATGACATGTGTAAACCCACTGATCGTGGTACCCTTTGTTTGATGTGTGTCAACATGACCCCGGGACAACACACTCCTTCTAAGGCTGAGAAACAGGTGTGTGAAAATGTATGACAGATAATGACGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1519004 lncRNA downstream 56168 79609180 ~ 79612441 (-) True LOC118938874
TU1519035 lncRNA downstream 61034 79605318 ~ 79607575 (-) False G1329494
TU1519033 lncRNA downstream 61034 79606354 ~ 79607575 (-) True G1329494
TU1519032 lncRNA downstream 61820 79605318 ~ 79606789 (-) False G1329494
TU1519021 lncRNA downstream 63729 79604612 ~ 79604880 (-) True G1329484
TU1519058 lncRNA upstream 4377 79675523 ~ 79679348 (-) True G1329514
TU1519075 lncRNA upstream 48415 79719561 ~ 79720143 (-) False G1329527
TU1519074 lncRNA upstream 48618 79719764 ~ 79721145 (-) True G1329527
TU1519036 lncRNA upstream 50356 79721502 ~ 79751236 (-) True G1329495
TU1519078 lncRNA upstream 53213 79724359 ~ 79725951 (-) True G1329528
XM_036945476.1 mRNA downstream 45183 79618502 ~ 79623426 (-) True LOC110513674
XR_005036252.1 mRNA downstream 55738 79609546 ~ 79612871 (-) False LOC118938874
XM_021622541.2 mRNA downstream 179481 79487003 ~ 79489128 (-) True LOC110536863
XM_036945474.1 mRNA downstream 328604 79307180 ~ 79340005 (-) False LOC118938873
XM_036945473.1 mRNA downstream 329032 79307180 ~ 79339577 (-) False LOC118938873
XR_005036254.1 mRNA upstream 897 79672043 ~ 79691305 (-) False LOC118938876
XM_036945477.1 mRNA upstream 20472 79691618 ~ 79695469 (-) True LOC118938877
XM_036945486.1 mRNA upstream 239536 79910682 ~ 79978629 (-) False LOC110510401
XM_036945483.1 mRNA upstream 239536 79910682 ~ 80084406 (-) False LOC110510401
XM_036945484.1 mRNA upstream 239536 79910682 ~ 80084406 (-) False LOC110510401
TU1519017 other downstream 100637 79567334 ~ 79567972 (-) False G1329481
TU1519018 other downstream 100637 79567334 ~ 79567972 (-) True G1329481
TU1519010 other downstream 125456 79542794 ~ 79543153 (-) True G1329475
TU1518390 other downstream 593073 79075290 ~ 79075536 (-) True G1329004
TU1518366 other downstream 637653 79029667 ~ 79030956 (-) True G1328987
TU1519163 other upstream 208262 79879408 ~ 79880360 (-) False G1329577
TU1519164 other upstream 208262 79879408 ~ 79880360 (-) False G1329577
TU1519165 other upstream 208262 79879408 ~ 79880360 (-) True G1329577
TU1519138 other upstream 239896 79911042 ~ 79914052 (-) False LOC110510401
TU1519140 other upstream 269040 79940186 ~ 79957109 (-) False LOC110510401

Expression Profile