RNA id: XM_036945483.1


Basic Information

Item Value
RNA id XM_036945483.1
length 3282
RNA type mRNA
GC content 0.57
exon number 15
gene id LOC110510401
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 79910682 ~ 80084406 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacagacgagGGGAGAGTTCTGTTCTTTCACTGCTCCATCCGGGAATTTTCGAATTAGCATTGACAGCCGAAGCGCAACTTTTCCCCAGGCAAAGTGAAATCAAGCCGCTCACTCGGACAAAATATAGTCCCCACTATTCAACTAAAAATGATCAAAAGAAAAATAAATCGACCGTTTGGAAAGGATGCGTCGACGCGGCGTTATTTTTAGAGTGGATCTGTCCAGGTGCTGAAACCTTTCCCCCGTGTTTAGAGCACTTTGCTCAGCGGCGTAAAGTGAGTGATGAGCCCTCTACACAGCAAAGAAGCAAGAACTTGCTTTGCAGCCTGAGTAGTTCTTCTTTCGATTGTTATTGtcgctttaaaaaaaaacattttaattcacTTAAACTTCACATTGATTACATCGAAAGTGGTACAAAAGTGTTTTTGAAGTCGGAACATGGAACTACAATGCCTGCAAGAGGCGTTGAAAGTCGAGATCCAATGTCATCAGAAACTAGTTGCACAGATGAAGCAAGACCCGCAGGATGGCGAGCTTAAGAAACAACTACACGAAAGACACGACAGAATAACAGCCCTAAGCGAAAAACAAAAGAAGCTGACTGTTAGAAGTTGTCCCGTAGGAGGGGCCACCAAGCCCCTCTCCCTCATCaagccccctcctcctccctcctcacaaAGCATCTCCATCTCCGTTCTACCGGCCAACCCGGTCGCCAAGACAGCTCCCGTTGCCATGGTGACAGCGCACATGACCGGTGGACAAAAGGTGGTGTCGGGAAGCGCAGCTCCAGggagctcctcctctcctcctcctctacagacaTCCTCCATCAACCTCCAGACCAATAGAGGGTCGGGAGGGGCGGTGCTACAGCCTTACAGTAGGAGAGAGaTGCTGGGAAACCTAACAGTAGTGCCCATCAAGGTTCCTCAGGTCAGCTCTCTACACCGGCTGTCTGGACAGACCTCCACTGTTCTACCtcaggttCAGCCAAAGAGTGTGATCCCAGCCAGCCTCCTCCCCAGCCACAGCCCTGTGTCTCTCCCTAGggagcagccagccagcctcctccTCAGCCACAGCCCTGTGTCTCTCCCTAGggagcagccagccagcctcctccTCAGCCACAGCCCTGTGTCTCTCCCTCaggagcagccagccagccagaaacAGTCATCCTGTCAGGCCCTCAGTCTCCTCAACCTCCAGAGAGCTACCGCTGTAGTCAGCCCTAAGAGCCACGCCCACAGTTTTAACCACACCCACAGCTCTAGCCACACCCTCACACAGAGCCACACCCTCGGCCCGGCCCTGCCTACAGCCAACAGCACGTTCAGTCCAGAACGTCTCTCCATAGGCCAGGGAGACACAGCCACCTTCACAACCTCCTCACCCCCACCCCTGGCCCAGGCCCTGGTCTCTCCCCTGGCCCAGACCCTGGCCTCTCCCCTGGCCCAGACCCTGGTCTCCCCCCTGGCCCAGACCCTGGTCTCTCCCCTGGCCCAGACCCTGGCCTCTCCCCTGGCCCAGACCCTGGTCTCCCCCCTGGCCCAGACCCTGGTCTCTCCCCTGGCCCAGACCCTGGTCTCTCCCCTGGCCCAGACCCTGGTCTCTCCCCTGGCCCAGACCCTGGTCTCTCCCCTGGCCCagacccagtctctctccccggCCCagacccagtctctctccccggCCCagacccagtctctctccccggcccagactcactctctctccccggcCCAGACCCAGCCTCTCTCCCCGGCCCagacccagtctctctccccggCCCTAGCCTGGCCTGGAGGCATCTCCCCCACCTctaccagcagcagcagcccaaCAGCCACCTCAGCCTCAGTTGCCCCCGGTGTGACCTTCTCCATCATCTCTGCCTCGCCGCCTGCCGACACCGGGAACAACAGGGTGTGGACCATCAGTGAGGCAGTCAAGGTCCAGCCGCTGGTCTTCAACACTGACAATAAGTTGAAAATAATCCAGCCGGAGGCAGAGACCCCCAGCTCCTCCCAGGACTCGCCAGGAGGACCCCAGGGGGCCGACAGCCCCTCACAGGAGATCCCCTCCATCACCTCGACCAccaacccctccacctctccctcctctacaccagccaagaagaagaagaaggatgaggacCCAGAGAAAATGTCCTTCATGGTGGCTCTTGGCCTGGTCACTACAGAGACACTGGAAGAGATCCAGACcaagagacaggagaggaagaggcggAGCACAGCCAACCCAGCCTACAGCGGCCTGGTCCAACCAGAGCGTAAACGCCTTGCATCAAATTACCTGAACGACCCACTCTTCCTGTCAGTGAGAGCCACTGGGGACTACAGATGGAAGGAAGAGCTGGAGCACGACGAACACTGCTCCGTGTGTAAGGGGGACGGAGAGCTGCAGCTGTGCCACAACTGCCCCAGAGCCTACCACCCTGACTGCCTGCACCCACCTCTCAAAACACCGCCCCGGGGGGTCTGGGTTTGCACCAAGTGTCAGAAGAAGGTTCTGAACAAAGAGAACATGTCGTGGCCACAGAACTTTGTCCAGTCCTATGTGACACACAAGACGGtgagagagggggagaagaggagtctGCTCAGGAGGAATGTAGAGCTGAAGAAGGAGTGTGCTCACCTGGAAGAACAGGACCAGCAACTCAGCACGTCCCTCACGCAGAAGGTGATGGACGTGCGGGAGCGTCTGATTGGTCAACAGAGGAACACCCAGTCCTCCCTGGAGCGTCTCAAGGCTCTGATTCGTCTGATCCAAAGAGACCAGATGATCCAGGTTACCATGACagccaccgccaccaccaccggAGTGTCCCTGCTCTCCCTGCCCTGGATCAAACCCTCCGGCGCCGCCACACACACAGTGCCCCCTGCTGGACCGTCTATGCTACTGCAGCAGAAGACTCTGGTCATGCCACAGTCTCAGACACAGAGCCAGGCTCAGAGCAATGTCTGAGCTCTAGTAGTACCACCCCAGCCCACCAGGGGGCCACAGTTCACAGTCCAAGGCTGGCccacaaatggcactctattccctatgtagtgtagaGCTTTTAGTAAACGGACCCATAGGAGAAGTTTCAAAGACATGTCCATTTGACATCAgagccctggtctgaagtagtacactatatagggaatagggctctggtctaaagtagtgtactatatagggaatagggctctggtctaaagtagtgtactatatagggaatagggctctggtctaaagta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1519136 lncRNA downstream 596 79909325 ~ 79910086 (-) True G1329554
TU1519135 lncRNA downstream 845 79909279 ~ 79909837 (-) False G1329554
TU1519132 lncRNA downstream 2933 79905904 ~ 79907749 (-) True G1329553
TU1519137 lncRNA downstream 4933 79905428 ~ 79905749 (-) True G1329555
TU1519160 lncRNA downstream 30322 79879408 ~ 79880360 (-) False G1329577
TU1519214 lncRNA upstream 11453 80095859 ~ 80096506 (-) True G1329615
TU1519275 lncRNA upstream 23730 80108136 ~ 80108571 (-) True G1329663
TU1519277 lncRNA upstream 24226 80108632 ~ 80108943 (-) True G1329665
TU1519426 lncRNA upstream 41378 80125784 ~ 80126311 (-) True G1329765
TU1519455 lncRNA upstream 44923 80129329 ~ 80131487 (-) True G1329770
XM_036945477.1 mRNA downstream 215213 79691618 ~ 79695469 (-) True LOC118938877
XR_005036254.1 mRNA downstream 219377 79672043 ~ 79691305 (-) False LOC118938876
XM_036945476.1 mRNA downstream 287256 79618502 ~ 79623426 (-) True LOC110513674
XR_005036252.1 mRNA downstream 297811 79609546 ~ 79612871 (-) False LOC118938874
XM_021622541.2 mRNA downstream 421554 79487003 ~ 79489128 (-) True LOC110536863
XR_005036264.1 mRNA upstream 50548 80134954 ~ 80139431 (-) False LOC110510850
XR_005036263.1 mRNA upstream 50550 80134956 ~ 80139431 (-) False LOC110510850
XR_005036259.1 mRNA upstream 50582 80134988 ~ 80139431 (-) False LOC110510850
XR_005036267.1 mRNA upstream 50694 80135100 ~ 80139431 (-) False LOC110510850
XR_005036261.1 mRNA upstream 50699 80135105 ~ 80139431 (-) False LOC110510850
TU1519163 other downstream 30322 79879408 ~ 79880360 (-) False G1329577
TU1519164 other downstream 30322 79879408 ~ 79880360 (-) False G1329577
TU1519165 other downstream 30322 79879408 ~ 79880360 (-) True G1329577
TU1519000 other downstream 239536 79668609 ~ 79671146 (-) False LOC118938876
TU1519018 other downstream 342710 79567334 ~ 79567972 (-) True G1329481
TU1519437 other upstream 48682 80133088 ~ 80139402 (-) False LOC110510850
TU1519407 other upstream 81166 80165572 ~ 80168114 (-) False LOC110510397
TU1519395 other upstream 124654 80209060 ~ 80231319 (-) False LOC110510397
TU1519392 other upstream 173141 80257547 ~ 80266270 (-) False LOC110517959
TU1519397 other upstream 181982 80266388 ~ 80268623 (-) False LOC110517959

Expression Profile