RNA id: XR_005036259.1


Basic Information

Item Value
RNA id XR_005036259.1
length 2211
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC110510850
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 80133088 ~ 80139431 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATGTGCTACCCGTTGAATTGTTGATGAATTTATTCCCCATGTTAAATCAATGACTACAAAATGTTTCAGACAGGCGACGGCTGCATTGCCTCACCTCAGCGACAGACAAAAAGGACACTTGGAAACAACCAAACCTAGAGACGAAGGAAAGAGCATCCTTTCACACCAACTGATGATGCCTTGTGGAAAACAGACTGTGTGACCTTACAGGCCCTCTCCCTGCATCCAAAATGGTGTGCTTCTTTTGAGCAGCTCTAGAAATATATATCTATAATGCCTCTGAGAGGCTGTGAAGGGAGACACATTCTCAAAGAAAGACAATTACTGAAGCAGACATTCCCTTTCGAGACAGTTGTGGGTGAACCGGCGGCCATTTTGAGTGAGTGTAATTCCacgagggagagaagggagttgGAGTCCATTTACTCAGACAGGTACACAGTTATGGGTGAACCCGGCGGCCATTTTGAGTGAGTGTAATTCCACGAGGGAGATGGAGTCCATTTACTCAGACAGGTACACAGTTATGGGTGAACCCGGCGGCCATTTTGAGTGAGTGTAATTCCACGAGGGAGTTGGAGTCCATTTACTCAGACAGGTACACAGTTATGGGTGAACCGGCGGCCATTTTGAGTGAGTGTAATTCCACGATGGAGAGAAGGGAGTTGGAGTCCATTTACTCAGACAGGTACACAGTTATGGGTGAACCGGCGGCCATTTTGAGTGAGTGTAATTCCACGATGGAGAGAAGGGAGTTGGAGTCCATTTACTCAGACAGGTACACAGTTATGGGTGAACCCGGCGGCCATTTTGAGTGAGTGTAATTCCACGAGGGAGATGGAGTCCATTTACTCAGACAGGTACACAGTTATGGGTGAACCCGGCGGCCATTTTGAGTGAGTGTAATTCCACGAGGCAGATGGAGTCCATTTACTCAGACAGGTACACAGTTATGGGTGAACCCGGCGGCCATTTTGAGTGAGTGTAATTCCACGAGGCAGAAGGAGTCCATTTACTCAGACAGGTAAAATAATGAATCTCACTCCAGCACAACATATTCCCATTTATCTTTTACAATAAATACAGTCTtacaaagaaagaaaaaaaaagatgtgAACAAACATTCagtagaaacacacagacagacaacactaggttTAGGCAGTGAAAGGTGAGAACTAACTAGATGCTgttggggaggggagggtttATCTAGTTCTCAGATTATCTGCTAAAACTGACCCAGTCTTGCATTAACATAAAGGGCCTGCGGataaaatggctccctattccctacatagtgcactactttagaccagggccctatggggggaaccctattccctacatagtgcactacttttgaccagggccctatgggggggaaccctattccctacatagtgcactacttttgaccagggccctatggggggggggaccctattccctacatagtgcactacttttgaccagggccctatgggggggggggaccctattccctacatagtgcactactttagaccagggccctatggtgcactagatagggaacagGGAGCCATTTGAAATGAACCCTCATCGACACACCCCTTTGAAAACACGGTTGAACTCCTCAAGTTATCCTCGAGGGAGCTGAACAGAGAGCAGGTGGGGAAAAAAACACAGTCCCTCGTCATACTAGTCTACCACACTTTAATTAAAAGGTCTCCTCTTGTCCACAACCAGAAGAACCCACAGTATAAAACATCAGCCTGCTTCCCTGTCGTCTTTCAACTCAAACTATAGCAGCAGTATTCAATCTAGACGGAATGTTACTGAACCCCCCCAACGACAAGATGAATGGATATGGGTCATTCAACAAGTCTCGTGTCTGCTAGGAGCAAGACAGTGGAGCCCAGTGGACTTTCACAGTAATAATCACAACCATATTTTACAACTAAAAATGTGTGTTGCTACACAACGCATGCAAATAAAACATTTCAACGGTCACATGTACGTCTCTGGGTTacagtgtgtctagtccaggtgtgtctagtccaggtgtgtctagtccaggtgtgtctctgggttacagtgtgtctagtccaggtgtgtctagtccagGTGTGTCTCTGGGTTacagtgtgtctagtccaggtgtgtctagtccaggtgtgtctagtccaggtgtgtctagtccaggtacgtctctgggttacagtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1519455 lncRNA downstream 3501 80129329 ~ 80131487 (-) True G1329770
TU1519426 lncRNA downstream 8677 80125784 ~ 80126311 (-) True G1329765
TU1519277 lncRNA downstream 26045 80108632 ~ 80108943 (-) True G1329665
TU1519275 lncRNA downstream 26417 80108136 ~ 80108571 (-) True G1329663
TU1519214 lncRNA downstream 38482 80095859 ~ 80096506 (-) True G1329615
TU1519459 lncRNA upstream 24969 80164400 ~ 80164628 (-) True G1329774
TU1519460 lncRNA upstream 29751 80169182 ~ 80169445 (-) True G1329775
TU1519461 lncRNA upstream 30976 80170407 ~ 80170641 (-) True G1329776
TU1519462 lncRNA upstream 34973 80174404 ~ 80174643 (-) True G1329777
TU1519465 lncRNA upstream 60901 80200332 ~ 80200586 (-) True G1329779
XM_036945483.1 mRNA downstream 50582 79910682 ~ 80084406 (-) False LOC110510401
XM_036945484.1 mRNA downstream 50582 79910682 ~ 80084406 (-) False LOC110510401
XM_036945485.1 mRNA downstream 50582 79910682 ~ 80084406 (-) False LOC110510401
XM_036945486.1 mRNA downstream 156359 79910682 ~ 79978629 (-) False LOC110510401
XM_036945477.1 mRNA downstream 439519 79691618 ~ 79695469 (-) True LOC118938877
XM_036945493.1 mRNA upstream 11586 80151017 ~ 80231645 (-) False LOC110510397
XM_036945495.1 mRNA upstream 11586 80151017 ~ 80231657 (-) False LOC110510397
XM_036945494.1 mRNA upstream 11586 80151017 ~ 80231658 (-) False LOC110510397
XM_036945496.1 mRNA upstream 12672 80152103 ~ 80153698 (-) True LOC118938879
XR_005036268.1 mRNA upstream 83590 80223021 ~ 80224268 (-) False LOC118938880
TU1519140 other downstream 177879 79940186 ~ 79957109 (-) False LOC110510401
TU1519138 other downstream 220936 79911042 ~ 79914052 (-) False LOC110510401
TU1519163 other downstream 254628 79879408 ~ 79880360 (-) False G1329577
TU1519407 other upstream 26141 80165572 ~ 80168114 (-) False LOC110510397
TU1519395 other upstream 69629 80209060 ~ 80231319 (-) False LOC110510397
TU1519392 other upstream 118116 80257547 ~ 80266270 (-) False LOC110517959
TU1519397 other upstream 126957 80266388 ~ 80268623 (-) False LOC110517959
TU1519416 other upstream 165870 80305301 ~ 80317594 (-) False LOC110516867

Expression Profile