RNA id: XM_036945502.1


Basic Information

Item Value
RNA id XM_036945502.1
length 2367
RNA type mRNA
GC content 0.50
exon number 8
gene id LOC110517959
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 80242189 ~ 80268839 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATAACACCATATTATAGTCGTGCCTAACAAATACATGTTCCCTAATGTCCTAGCAGAGTTTTATTTTTTGAAAACATTTGTGGTTATTATTTTCCTGTATTAGTCTTTTTTGACTTTCCGTAGTTGAAGTCAGAACGCTAATCTCTTTCCGTAGTTGACGTCAGAACGCTAATCTCTTTCCGTAGTTGAAGTCAGAACGCTAATCTCTTTCCGTAGTTGAAGTCAACTATTTGATAACATTTTGTTGACCATCTAGCTTCTGTCAAAGCCTCTTCTACTTCTCGATTGTAATACGTGGAAATCTTCAACTATCTCTACTTGCAATTAAGACCTCTTTAGTTAACATGAACTGTATGGTGTGACATGATTAAGGCTTGCAATAAGTTAACAAGAGACAACAACTAAACTAAACATGAAACTACGTGTGAGGATAAACAAGCAGACCAGCCGGGTGAAGCTGGAGGGAGAGGagcccactctgacagagctcaatgTTCAAATCAGAGAGATCCTTCTGCCTTCACATGGCCTCAGCCCAGACACAGAGTTCACCTTGTCCCTGAACGGCTCAGATCTTCTATCTGACTCTGGTCAGACTTTGTCCTCCTGTGGCATCGTCACTGGGGACCTGGTCTGTGTCATCTTGCCTCCATCTGTGGCTGTGCCCTTCGCTGCCTCTGCTCCCTCAGCCCGCCAGGCTGTGCCCTCAGGCTCCCCTGCTTCCTCTGCTGCCTTTGCCTCTTCAGCCCGCCAGTCatccagcaacagcagcagcagcagtagtagtagtcttGGGCTGTACCAAGCTGTACACCCACCAGCCCAACGCTCCAGTGAGGCCAGCACCAGCAAGGGGGCGGAGCCTCAACAGGAAGtggtcagagaggaggaggagcaggaagaagAGGCAGGTCAGTGGGTGTGGGAGCCCATGCTGTGTGGGGAGGCAGAAGGAGGGAAGGTACCCCATTCCCTGGAGGTTCTGTACCACCAGGCTCAGAGCAGCAGTACCTGTGATGCCCTGATGGTGGCAGTCCACCTCCTGATGGTGGAGACTGGCTTCCTGTGTCAGggctCTGAGGGGCGTTCTGGTGAGATGCCAGCTGGGTGGAGGGCACCAGGAGGGCTGTACAGACTGCAGTATGCCCATCCTCTCTGTGACGACAGCCTGGCCTTGGTCCTAGCTGTCCCCATGGGACCCGTTCTGGTTATCAACGGTGACAGTGCAGCGGCCGTCTACACAGAGCTGAGGAAGTTGTCCCGGGTCTTCAAAGACCAGCTGGTGTATCCTCTGATAGCTTCAGCCAGAGAAGACGGCCAGGACCACAGCAGAGCCAGAGACACTCAGTGGAGAGAGCTCTACAAGAAGAAGTACAAGTGGAGGAGAGAAGCAGCCAGTTACCGGCACCACATGCCCCGTTACCACCCTGTCCCCCCACCgctctaccccctccaccccctccccaaCAACCCCTTCCCCTTCTACCCGCCTGGCATCATCGGTGGGGAGTACGACCAGAGACCTGGCATCCCCGGTGGTATTCTGCCCCGCCCCCGCTACGACCCTATTGGTCCGCTCCCGGGTCACGATCCCACAGCAGGAGGGCTGATTGGACGAAGGGGGCTGAGACCTGCTGGGAACCGGCCGGCTGACATCAGAAGAGGGTTCATATGACCTCCCTGACCAGTGACCTCTAGTGGTGGTGTAGGAGTATGACCACCACACAGAGAAGCTTAAATAAAACAGAGATGTTGAAGACTGACTGATTAGCCTACCTTAAATAAGGTGCTATAGTCACAGATAAATGCCGTTGTTCGGTCTATAAACACTAACCCTCACCCAGCCTGCTTATTATCCCCTAAACCTCATCCAGGTGTTTTTTATAAACCCTATCCTTGACCCAGAATCAGCTTTTAATAGCTCATGTTCTCCCGTGTGTGTTTAGTAAGTGATGAGGTCAGATCATACCGATCTGCTATCTTCATTTGATCTCTCTGTTGTTGCAGAGAATGTtgctgcacagcaggaaatgtaaACTTCTAAAAGTTTTCCCGTGAGAAACCGGTCAAATTTAAGATAGTAGATCTGTAAGGGTGTCTGGGGGATTGAGGTGGCCGTTTCGATCTTCCACCATTCACTATGAAGAcattttgtacttgtttcctcgcAGACGAAAAGCTGTAAATAAAATGAGAAAATGGCAATCGACTGGTTTTTAGCTGTGGTCATATTTGAGCCCTCAGTCTGTCTCTGAAATCCAGACTGTTCAGGGACGATTCAATAGTCATGTACACTGAGctacaatataaacacaacatgtaaagtgtctcTATGTTTtatgagatgaaataaaagatcccgggAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1519418 lncRNA downstream 1112 80235966 ~ 80241077 (-) True LOC118938881
TU1519469 lncRNA downstream 9094 80232623 ~ 80233095 (-) True G1329783
TU1519467 lncRNA downstream 18743 80223008 ~ 80223446 (-) True LOC118938880
TU1519466 lncRNA downstream 19571 80222165 ~ 80222618 (-) True G1329780
TU1519396 lncRNA downstream 28676 80209060 ~ 80213513 (-) True LOC110510397
TU1519471 lncRNA upstream 1199 80270038 ~ 80278378 (-) False G1329784
TU1519473 lncRNA upstream 3646 80272485 ~ 80284078 (-) False G1329784
TU1519472 lncRNA upstream 7229 80276068 ~ 80276713 (-) True G1329784
TU1519415 lncRNA upstream 18133 80286972 ~ 80287440 (-) False LOC110516867
TU1519419 lncRNA upstream 19529 80288368 ~ 80289069 (-) False LOC110516867
XM_036945504.1 mRNA downstream 1111 80235130 ~ 80241078 (-) False LOC118938881
XM_036945494.1 mRNA downstream 10531 80151017 ~ 80231658 (-) False LOC110510397
XM_036945495.1 mRNA downstream 10532 80151017 ~ 80231657 (-) False LOC110510397
XM_036945509.1 mRNA upstream 18122 80286961 ~ 80330652 (-) False LOC110516867
XM_036945506.1 mRNA upstream 18122 80286961 ~ 80347887 (-) False LOC110516867
XM_036945507.1 mRNA upstream 18122 80286961 ~ 80347887 (-) False LOC110516867
XM_036945508.1 mRNA upstream 18122 80286961 ~ 80347887 (-) False LOC110516867
XR_005036269.1 mRNA upstream 18122 80286961 ~ 80347887 (-) False LOC110516867
TU1519395 other downstream 10870 80209060 ~ 80231319 (-) False LOC110510397
TU1519407 other downstream 74075 80165572 ~ 80168114 (-) False LOC110510397
TU1519437 other downstream 102787 80133088 ~ 80139402 (-) False LOC110510850
TU1519140 other downstream 285080 79940186 ~ 79957109 (-) False LOC110510401
TU1519138 other downstream 328137 79911042 ~ 79914052 (-) False LOC110510401
TU1519416 other upstream 36462 80305301 ~ 80317594 (-) False LOC110516867
TU1519417 other upstream 36462 80305301 ~ 80317594 (-) True LOC110516867
TU1519403 other upstream 79422 80348261 ~ 80354313 (-) False G1329752
TU1519406 other upstream 79422 80348261 ~ 80352385 (-) False G1329752
TU1519490 other upstream 83864 80352703 ~ 80353641 (-) True G1329798

Expression Profile