RNA id: XR_005036283.1


Basic Information

Item Value
RNA id XR_005036283.1
length 6366
RNA type mRNA
GC content 0.52
exon number 28
gene id LOC110516867
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 80286961 ~ 80347887 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCAACGAAAATGTGACGTTTCCCGTTCCGTTGAATCGACACGCCGCAAGAAATCGACTCCTGAAATTCCTGCTCTGAACCCTTAGCCGAGCTAAACAGACAAACTCGAAGTGCTTTTTTGGGTAATTCCTGACGATTTAGGGATGTACTGACGGACGGAGACGATGGAGATAAAAGTATAACAATAAGATGTGCCTGGCCTGCCGGAGGGCAGCAACAGAAGACAGTGAAACTACCGTGGAGGGGAGCAGCAGAGGACGGTGAAACTACCGTGGAGGGGAGCAACAGAAGACGGTGAAACTACCGTGGAGGGTAGCAGCAGAAGACCTTCTCATGGCCTGCCAGTCTGTCTCCATCATCAACATGGACGAGCAGGCCCTGCTGGGGCTCAACCCTAACGCAGATGCCTGCTATAGGCAGAAGGCGATGGTGTATTTTGAGCAGTTGAAGGAGTCCCAGGATGCCTGGGAGGTGTGTGCAGAGGCCCTGGCTAAAGGCATTTACAGTGACGACCATGTGAAGTTCTTCTGTTTCCAAGTCCTGGAGCACCAGATCAAGTACAGACATGGAGGGCTCAGTCCTGCCCAGCAACAGCTGATCAGAGAAACCCTGATGAAGTGGCTGCAGGGTCAGttaATGAACTCCCAACCAGAGAAGCCGTTCATCCGTAACAAGGCAGCCCAGGTGTTTGCTCTGACCTTCGTGATGGAGTACCTGACCCACTGGCCCAAGTTCTTCCACGACCTGCTGTCTCTAGTGGGCCTGAACCCACACGGGGTCGACGTCTACCTCAGAACACTGATGGCTATCGACGCTGAGGTGGTGGACAGAGACATCCTGCACTCCCCTGAGgagGTGCGTAGGAACACATTAATAAAAGATGGTATGAGGGAGCAGGTCATCCCCAGCCTGGTTGAGTCCTGGTACCAGATCCTCGGGGCCTATCAGCAGTCTCACCCTGAGATCACCTGTCAATGTCTGGAGGTAGTGGGGGCATACGTCTCCTGGATAGACCTCAACCTCATTGCCAACGACAGgTTTGTGAACCTGCTGCTGAGTCAGATGTCTGTGGAGGACCTGAGAGAGGAGGCGTGTGACTGTCTGTATGAGATTGTCTGTAAAGGAATGGCCCCGACAGACAAGACCAAGCTGGTCGAGTCCCTCTGTCAGGTCCTGCAGTCGGCTGGCTTCTTCAACGTGGAccagGAGGAGGATGTGGACTTCCTGGCTAAGTTCTCCAGACTGGTGAACGGGATGGGCCAGTCTCTGGTGCTGAGCTGGACCAAACTGGCCAAGGGGGGCGCCGTGAAGGAAGCCGCCGAGGCGCTGCGTGCCCTCGAGACCAAGGTTCCTCTGCTCCTCCAGCTACTGGTCCACGACGACGATGACATCTCAGCCAACATCGTAGGCTTCTGCTACGACTACCTGAACGTACTCAAACAGGGGTCCGAGTGGCAGAGTCACATGCCtcaggtagggagaggaggacaggaggccaTTGAAGAGTACTGGGACTCAGACAAGTTCCCGCTGCTGACAGACCAACAGAAGACTCACGTTGAGGACATCATGTTGGCCGTCATGAAGAAACTAACTTATGATGAAGAGTACAACTTTGACAACGAGgGGGAGGATGAAGCGATGTTTGTAGAGTACAGGAAACAGTTGAAGATGCTGTTGGATCGCCTGGCTCAGGTGTCTCCTGACCTGCTCCTGGAAGCTGTAGGCAGAGTCTTCAACAACACCATACAGCGTTGGCAGACGGCGTCCTtcatggaggtggaggtggcCATCAGGCTGCTGTACATGCTAGGAGAGGCTCTGCCTGCGTCTCACGGAGCTCACTTCTCTGGCGACACGGCCAAGACCTCCGCCCTGCAGGATATGATGAGAACGctggtctcctctggtctcaGTGGTTACCAACACACGTCTGTGTCGCTGGAGTTCTTCGAGACGGTGGTTCGTTACGACAAGTTCTTCCTGGTTGAACCGCAGCACATTCCTATTGTCCTGATGTCCTTTCTGGACCATCGCGGTCTGAGACACAGCAGTCCGAAGGTCCGTAGCAGAGTGGCCTACCTCTTCTCACGGTTCGTCAAGACACTGCATAAACACATGAACTCCTTCATTGAAGACATCCTGTCCAGGATACAGGACCTGCTGGAGCTAGCTCCTCCTGAGAACGGTTTCCCTGCGCTGCTGACCAGCGATGACCAGCTGTTTATATTTGAGACGGCGGGGGTGTTGATCGTCCACGGAGAGAGTCCCGCGGAGAGGAAGCAGGCGCTGATGAGATCCCTGCTGACCCCGCTGACCGACGCCTTCCGTCTGCTGCTGGCCAAACTGGCctctgagagggaggaggagaggcaggctgCGCTGGCCGACTGTCTCAGTCACGCTGTTGGCTTCGCTAGTCGTACCAGTAAGGCGTTCAGCAACAAGCAGACAGTGAAGCAGTGTGGATGTACTGAAGTCTACAGAGACTGTCTGCAGACCTTCCTGCCTGCACTGAGCTGTCCTGTCCAGAGGGGGTCTCTGCGTAGCGCTGTCCGCTCCTTCCTTCATCGCATGATCATCTGTCTCGAAGAAGAGGTCCTGCCCTTCGTCCCGGCGGCATCGGAGCACATGCTGAAGGACTGCGAGGCCAGGGACCTGCAGGAGTTCATACCCCTCATCAGTCAGATCACCGCTAAGTTCAAGgaccAGGTGTCTCCTTTCCTGCAGCAGGTGTTCATGCCTCTGGTCCTGGCCATCTTTGAGGTGTTGTGTCGACCTGCTGAGGACAACGACCAGGCAGCAGCTCTGGAGAAACAAATGTTACGTAGAAGCTACTTCACCTTCATACAGACCATAACCTCCAGCGGGATGAACGAAGTCCTGGCCAACCAGGGTGTTGAGAACGTAGAGCGGGTTCTGTTCACCATCATCCAGGGAGCTGTCGACTTCCCCGACCCCATCGCCCAGAAGACCTGCTTCATCATCTTGTCCAAGCTGGTGGAACTCTGGGGAGGTAAAGACGGTATGGCTGGTTTCCCAGACTTCATCTATAAACACATCGTCCCAGCATGCTTCCTGGCTCCTCTCAAACCATCCTTTGATCTCACGGACGCTCAGACCGTCCTGACGTTGTCAGAGTGTGCTCTGACGTTGAAAATGATTCATCTCAGAAGGGGTCCGGAGTTTATCCAGTACCTTCAACAGGAGTACCTCCCTTCTCTACAGGTGTCACCTGAAATCACACAGGAAGTGTGTCAAGTGCTTCAGCAGCCAGACGCCAAGGTCCTCAAAAACTACATGAAGgctTTCTTTCAGCGAGCCAAACTGTAAATACAAACCGAGCTGGAAGGATTGAGAGAGGACACTGGAAACTGAGAGAAGACTGGTAGTGAGAGAGTACCACTCACTACGGACAgccggacagagagagagatcttaaAGACGGAGAGCTTAGCATAGGAGCGGCCTTAGCACTTCTGAAGGTAACTGCATAACCCCGCCCATCCTGTCCACGTGGGAGGGAACGGAGCCAAGACACAAGGACACGAGTGGTCAAGGAGGCTTTCACTGGGGTGACCACACCCCCCTCCACTGATCCAGGCCCAATCAAGGACGTGCTCTCCATCTGGGGTGGTACCCTGGTCAAGTGAAGATGTGATTGGTTGGATTCTCTGCAAGACAGGAAGTAAACTAGAGTATAGAGGAAGGCTTATGGAACGAGGCTTCCATAGTAGAATACCAAGTATCCTTTAACAGGCCTGAAGCCTCATCTGTCTGTTGGTAATGATCCAACAATGACCTGAACACAGTCTAATGATTAGGATTTATTagtttataaaaaatgtattttttttcttaaaaaaaaattaaaaaaacggTTTTCAAGATGTCTTTGATTTGAGTGGTTGAACGTGGAGGTTTTGTTTCTCTTTGCCCTGTGAAGGAATTGATGAACTAAATAAAAGGGCTTGACATATTTTTCTAGATTTTTCTGTTGTGGAAGAAATGGGATGGTTGGGGTAGGATGTGTTTTAGTTTGACGTGATATACAGGACAGACCTCTAACGGGAGGATGACAGACCTCTGTAACGGTGGATGACAGACCTCTGTAACGTTGTCAGGTACCCCTGTCCCTCAGAACGTTGTCAGGTACCCCTGTCCCTCAGAACGTTGTCAGGTACCCCTGTCCCTCAGAACGTTGTCAGGTACCCCTGTCCCTCAGAACGTTGTCAGGTACCCCTGTCCCTCAGAACGTTGTCAGGTACCCCTGTCCCTCAGAACGTTGTCAGGTACCCCTGTCCCTCAGAACGTTGTCAGGTACCCCTGTCCCTCAGAACGTTGTCAGGTACCCCTGTCCCTCAGAACGTTGTCAGGTACCCCTGTCCCTCAGAACGTTGTCAGGTACCCCTGTCCCTCAGAACGTTGTCAGGTACCCCTGTCCCTCAGAACGTTGTCAGGTACCCCTGTCCCTCAGAACGTTGTCAGGTACCCCTGTCCCTCAGAATGTTGTCAGGTACCCCTGTCCCTCAGAATGTTGTCAGGTACCCCTGACCCTCAGAACGTTGTCAGGTACCCCTGTCCCTCAGAACGTTGTCAGGTACCCCTGTCCCTCAGAACGTTGTCAGGTACCCCTGTCCCTCAGAACGTTGTCAGGTACCCCTGTCCCTCAGAACGTTGTCAGGATGTCCTGAACGTCAGGGCCTCTTCATGGTGTTTCAGTAGGAGTGCTGATGGAGGATGTTATGAATAAGAAGAGGTCGGACTGCTTCTAGATCAGATATGCTTTATGAACTCAAGCCCTGAACAaggttctcctctaccctcagtcCCCTCAGAAAGAATAGGACCTGCCCTGAACAaggttctcctctaccctcagtcCCCTCAGACAGAATAGGATCTACCCTCAGTCCCCTCAGACAGAATAGGATCTACCCTCAGTCCCCTCAGACAGAACAGGACCTGCCCTGAACAAGGTCCTCTACCCTCAGTCCCCTCAGACAGAATAGGACCTGCCCTGAACAaggttctcctctaccctcagtcCTATCAGAAAGAACAGGACCTGCCCTGAACAAGGTTCTCTACCCTCAGTCCCCTCAGACAGAATAGGACCTGCCCTGAACAaggttctcctctaccctcagtcCCCTCAGACAGAATAGGACCTGCCCTGAACAaggttctcctctaccctcagtcCCCTCAGACAGAATAGGACCTGCCCTGAACAaggttctcctctaccctcagacAGAATAGGACCTGCCCTGACCAaggttctcctctaccctcagacAGAATAGGACCTGCCCTGAACAAGGTTCTCTACCCTCAGACAGAATAGGACCTGCCCTGAACAaggttctcctctaccctcagtcCCCTCAGACAGAATAGGACCTGCCCTGACCAaggttctcctctaccctcagtcCCCTCAGAAAGAATAGGACCTGCCCTGAACAaggttctcctctaccctcagtcCCCTCAGACAGAATAGGACCTGCCCTGAACAaggttctcctctaccctcagtcCCCTCAAACAGAATAGGACCTGCCCTGAACAaggttctcctctaccctcagacAGAATAGGACCTGCCCTGAACAaggttctcctctaccctcagacAGAATAGGACCTGCCCTGAACGAGGTTCTCTACCCTCAGTCCCCTCAGAAAGAATAGGACCTGGTTTAACAAACATCTGTTTGTGATCTAAAAAAAATCAGACAATGTCAGGAACTGCATCTCAGCTGTACTTACTGTCTGTTGGTGGGGGGCGCTTAACAGAAGGTCCACTATAGGGCCCTGGGCAACATATAGGGAATGATGGCGGTGGGGGGGGGTCTGACTGAGTGAAGTCATCCACTCTGCCCTCAACAGGAGAACTCTGGACCAGACTGACTAGCGAAGTGTTTACCCCGGTGGTCGCTACGACACCGTCACTTCCAGAAGGAAAGTCTTTTAATAGCGGATCAAAATGTAAATATGACGTTTTATTTTAAAGAAGGAATAATATGTTGGGATGTAAATAACTTAGTTTGatgggttgttgttgttgttgttgttgttttgaactTCTGTTCCTTTTCTGAAGAGATGTAATGTTAAAGATTAGTCCGTGTCGTCTTTACAGGTTTGAGCAGCATGATCCATAGGACTGACTATAACCAGACAACGGCATTTTATACCCAACTGTTACTCACAATTCAGCTTGACCAATGAGGAAATGTGATTGGTAATGCTAACCTGCCTGTTAACTATATACTGAACAAACATGTCAATGATTTAAACTCCGTTACAGTTCATtaaatgaaatcagtcaattgaaataaattcattagatcGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1519473 lncRNA downstream 2883 80272485 ~ 80284078 (-) False G1329784
TU1519471 lncRNA downstream 8583 80270038 ~ 80278378 (-) False G1329784
TU1519472 lncRNA downstream 10248 80276068 ~ 80276713 (-) True G1329784
TU1519398 lncRNA downstream 18338 80266388 ~ 80268623 (-) True LOC110517959
TU1519413 lncRNA downstream 43865 80235291 ~ 80243096 (-) True G1329754
TU1519402 lncRNA upstream 374 80348261 ~ 80349586 (-) False G1329752
TU1519405 lncRNA upstream 4107 80351994 ~ 80354313 (-) True G1329752
TU1519491 lncRNA upstream 9087 80356974 ~ 80357260 (-) True G1329799
TU1519492 lncRNA upstream 10022 80357909 ~ 80358325 (-) True G1329800
TU1519493 lncRNA upstream 10493 80358380 ~ 80358706 (-) True G1329801
XM_036945499.1 mRNA downstream 18122 80242189 ~ 80268839 (-) False LOC110517959
XM_036945500.1 mRNA downstream 18122 80242189 ~ 80268839 (-) False LOC110517959
XM_036945501.1 mRNA downstream 18122 80242189 ~ 80268839 (-) False LOC110517959
XM_036945502.1 mRNA downstream 18122 80242189 ~ 80268839 (-) False LOC110517959
XM_036945504.1 mRNA downstream 45883 80235130 ~ 80241078 (-) False LOC118938881
XR_002472471.2 mRNA upstream 21422 80369309 ~ 80370491 (-) False LOC110516866
XM_036945567.1 mRNA upstream 22680 80370567 ~ 80391741 (-) False LOC118936542
XM_036945521.1 mRNA upstream 769309 81117196 ~ 81119754 (-) False LOC110515349
XR_005036293.1 mRNA upstream 769309 81117196 ~ 81119754 (-) False LOC110515349
XR_005036294.1 mRNA upstream 850435 81198322 ~ 81198931 (-) False LOC118938883
TU1519397 other downstream 18338 80266388 ~ 80268623 (-) False LOC110517959
TU1519392 other downstream 20691 80257547 ~ 80266270 (-) False LOC110517959
TU1519395 other downstream 55642 80209060 ~ 80231319 (-) False LOC110510397
TU1519407 other downstream 118847 80165572 ~ 80168114 (-) False LOC110510397
TU1519437 other downstream 147559 80133088 ~ 80139402 (-) False LOC110510850
TU1519403 other upstream 374 80348261 ~ 80354313 (-) False G1329752
TU1519406 other upstream 374 80348261 ~ 80352385 (-) False G1329752
TU1519490 other upstream 4816 80352703 ~ 80353641 (-) True G1329798
TU1519501 other upstream 22682 80370569 ~ 80391609 (-) False LOC118936542
TU1519502 other upstream 22862 80370749 ~ 80391674 (-) False LOC118936542

Expression Profile