RNA id: TU1520240


Basic Information

Item Value
RNA id TU1520240
length 1902
RNA type TUCP
GC content 0.44
exon number 5
gene id LOC110515349
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 81117196 ~ 81119754 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGTCACTGTGCTAAAAACATTGGAGTAGGAAAAGTGCAACAAAACGCTGTCGAACACGAAGCTGCAGGAATGTTTCCTTTTAAGAAAATGTGTTGATTTGTGAAATAATATTTTTATAATCCACAACTTCTCTTCAGTTGATCGTCATCCATCTTGAGAACTGTCGAATTTGCGTCACTAGCAGCCCTCAATAGATAGGTTGTGTTGACCAAAATGGATGACAGCAAGATGGTGGGAGGCAAAGTCAAGAAACCCGGTAAACGAGGCCGTAAACCCGCTAAGATTGATCTGAAAGCGAAGTTGGAGAGGAGCAGGCAGAGCGCCCGGGAGTGCCGAGCCAGGAAGAAGCTCCGGTATCAGTACCTAGAGGAACTCGTGTCCAGCAAGGAGAGGGCCATCTGCGCCCTGAGGGAGGAGCTGGAGATGTACAAGCAGTGGTGTACAGCCATGGACCAGGGGAAGATCCCGTCTGAGATAAAGGCCCTACTGACAGGAGATGAACAGAAGCCTCCTCAGAGCTCCTCCACCAAGAGCTCCAAGAACAGCAACCAGAGCTAATGTGTTGGGAGTGCCAGACCAGAACTAGTCTGACTGTCAGTTTGTTAGAGGTGGCAGccctgggttgtattcattagggaaATTATATCAAATGTTGTGCAACAGAAAACAGGGTGTTCATATAATACCTACCCCCTTTTTTCCAtcccgtttgcttccgtttgttGCCCTGGTGAATACGACCCAGAGCGAGTCTGTCTGATGAAAGATTCCAGACCAGAGCTAGGCAGTAAGTACTCGGGTCTGTCATGCCAGACCGCTCCACTGTATAAGGCCTCTGTGACGGAGAGTGAAGAGGTGTCTCACCGGTCTGTCTGTTTCAGCCCCTCCCCCCTCTAGAGGAGACGCACAGCAACAGAACTGTCAGAGACGCATATCATTACTAACGCTGGAGGACCTTCAGAGTAATAGCTTGTATTATTTGACAGTTGTAATCCACATTACTGGCCTGATTTATCATGCGTGGTTCactattgggttagggttaggggttcactattgggttagggttaggggttcaCTATTGCAACTCTTGGATTCGTTAATGTTAGTAATGTGAAATATGTTATTAGTTGCAGCTATAGACACCTTTAGACAGCCTGTATTATTGAACAGTTAATCTCAATGTTTTAGCTTCTACGTGTGAGAATTGAGGAAGCGTTTTAATGGTACATGGATGAAACCAGGACAGAAGAAGTGAAAGGGTTTAGACTGTGCATGTCCTACCTGGCCTAGACACTCAGACAAAACAAAGCACATATTCACCTTCAAATAAGGAATTACTCTTTGACCTTTTATTGGTTAGTTTGTaacatcccaaatggcactccattccctaaatagagccctggtctaaagtagtgcactatatagggaatagggcaccattggGGACATGTATATGATGCCATGTATctgcagagatgatgatggtgatgtaatGATATACAGCACTGTATGTtgaatttatttatatatttttattggaTCACAGAAAGCCCTTTTTTCCCCGGTTTTGTAGTGTGATGTTGTAGAACGTATAGAAGGTCTGACAGACAAAAGAAAGATCTTTCCCATTTTGTAGAGATGTTCAAGTCTCTTGTTTGTGTGAAAGGCTAGAATGGGGGCACGTCCTTACCAGAACAGGAGCTGCTGAGGCATTGCTCCACCTATGTTGTCTTTCAGTAACGTTACATTGTATCATGTGGTATCTAATCGAGGCCTAGACGACTCATGTTCTTTCACCATAATGCAACCAAAATATAGTAGCCTGTACCTGTTTTGGTTTACAAATGATGATTCTATTGTCCTAAGGAAATTAAATAAGGACTCATTAATAGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1520241 lncRNA downstream 1423 81115333 ~ 81115777 (-) True G1330300
TU1520242 lncRNA downstream 2582 81113546 ~ 81114618 (-) True G1330301
TU1520097 lncRNA downstream 10058 81106875 ~ 81107142 (-) True G1330206
TU1520095 lncRNA downstream 12126 81099884 ~ 81105074 (-) False G1330204
TU1520261 lncRNA upstream 50989 81170711 ~ 81172040 (-) True G1330319
TU1520280 lncRNA upstream 69549 81189271 ~ 81190629 (-) True G1330329
TU1520281 lncRNA upstream 70985 81190707 ~ 81191215 (-) True G1330330
TU1520310 lncRNA upstream 104926 81224648 ~ 81225218 (-) True G1330343
TU1520314 lncRNA upstream 118191 81237913 ~ 81239750 (-) True G1330347
XM_036945567.1 mRNA downstream 725459 80370567 ~ 80391741 (-) False LOC118936542
XR_002472471.2 mRNA downstream 746709 80369309 ~ 80370491 (-) False LOC110516866
XR_005036285.1 mRNA downstream 769313 80286961 ~ 80347887 (-) False LOC110516867
XR_005036294.1 mRNA upstream 78600 81198322 ~ 81198931 (-) False LOC118938883
XR_005036295.1 mRNA upstream 78600 81198322 ~ 81198977 (-) False LOC118938883
XR_005036296.1 mRNA upstream 222192 81341914 ~ 81343353 (-) True LOC118938884
XM_036945525.1 mRNA upstream 266308 81386030 ~ 81422464 (-) False LOC110517956
XM_036945524.1 mRNA upstream 266308 81386030 ~ 81495207 (-) False LOC110517956
TU1520033 other downstream 111128 81004872 ~ 81006072 (-) True G1330168
TU1519998 other downstream 159410 80955531 ~ 80957790 (-) False G1330142
TU1519999 other downstream 159410 80955531 ~ 80957790 (-) True G1330142
TU1519955 other downstream 237797 80878820 ~ 80879403 (-) False G1330106
TU1520293 other upstream 77102 81196824 ~ 81199165 (-) False LOC118938883
TU1520291 other upstream 78038 81197760 ~ 81199165 (-) False LOC118938883
TU1520292 other upstream 78038 81197760 ~ 81199165 (-) True LOC118938883
TU1520322 other upstream 130555 81250277 ~ 81251251 (-) True G1330352
TU1520489 other upstream 283198 81402920 ~ 81432077 (-) False LOC110517956

Expression Profile