RNA id: TU1520293


Basic Information

Item Value
RNA id TU1520293
length 1404
RNA type TUCP
GC content 0.43
exon number 6
gene id LOC118938883
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 81196824 ~ 81199165 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCAAATGTCCACATTGTCTGTTGTAAAACGAGCTACATTCTGACACAGCAACAACAACCCCATAACAGACCTACTATCTCTCACACACGTCCACACACTGTGGGAGCTGAACAGACGCATGTCTCAGGTCAGGGTTCAGGTCTGGGTCAGGACCACTGGTCTCAGGTCAGGACCACTGATCTCAGGTCAGGGTTCAGGCCTGGGTCAGGACCACTGGTCTCAGGTCAGGACCACTGATCTCAGGTCAGGGTTCAGGTCTGGGTCAGGACCACTGATCTCAGGTCAGGGTTCAGGCCTGGGTCAGGACCACTGGTCTCAGGTCAGGACCACTGATCTCAGGTCAGGGTTCAGGTCTGGGTCAGGACCACTGGTCTCAGGTCAGGGATGGGACCTCTGACCTCAGGACAAGGTTCAGGTCTGGGATGGGACCACTGGTCTCAGGTCAGGGTTCAGGTCTGGGTCAGGACCACTGGTCTCAGGCCAGGGATGGGACCACTGACCTCAGGTCAGGGTTCAGGTCAGGGATGGGACCACTGGTCTCAGGACAGGGTTCAGGTCAGAACTTATTCAAAgcctttaccacaggtatcagtcattacatcattatatcattcctttaccacaggtatcagtcattacatcattcctttaccacaggtatcagtcattatatcattcctttaccacaggtatcagtcattacatcattcctttaccacaggtatcagtcattatatcattcctttaccacaggtatcagtcattatatcattatatcattcctttaccacaggtatcagtcattatatcattcctttaccacaggtatcagtcattatatcattatatcattcctttaccacaggtatcagtcattacatcattacatcattcctttaccacaggtatcagtcattacatcattacatcattcctttaccacaggtatcagtcattatatcattcctttaccacaggtatcagtcattatatcattcctttaccacaggtatcagtcattatatcattcctttaccacaggtatcagtcatttcatcattcctttaccacaggtatcagtcattacatcattacatcattcctttaccacaggtatcagtcattatatcattacatcattcctttaccacaggtatcagtcattatatcattcctttaccacaggtatcagtcattatatcattcctttaccacaggtatcagtcattatatcattacatcattcctttaccacaggtatcagtcattatatcattcctttaccacaggtatcagtcattacatcattcctttaccacaggtatcagtcattacatcattcctttaccacaggtatcagtcattatatcattcctttaccacaggtatcagtcattatatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1520281 lncRNA downstream 5609 81190707 ~ 81191215 (-) True G1330330
TU1520280 lncRNA downstream 6195 81189271 ~ 81190629 (-) True G1330329
TU1520261 lncRNA downstream 24784 81170711 ~ 81172040 (-) True G1330319
TU1520241 lncRNA downstream 81047 81115333 ~ 81115777 (-) True G1330300
TU1520242 lncRNA downstream 82206 81113546 ~ 81114618 (-) True G1330301
TU1520310 lncRNA upstream 25483 81224648 ~ 81225218 (-) True G1330343
TU1520314 lncRNA upstream 38748 81237913 ~ 81239750 (-) True G1330347
TU1520333 lncRNA upstream 67129 81266294 ~ 81266723 (-) True G1330360
TU1520342 lncRNA upstream 85080 81284245 ~ 81284692 (-) True G1330369
TU1520344 lncRNA upstream 86597 81285762 ~ 81286331 (-) True G1330371
XM_036945521.1 mRNA downstream 77070 81117196 ~ 81119754 (-) False LOC110515349
XR_005036293.1 mRNA downstream 77070 81117196 ~ 81119754 (-) False LOC110515349
XM_036945567.1 mRNA downstream 805083 80370567 ~ 80391741 (-) False LOC118936542
XR_002472471.2 mRNA downstream 826333 80369309 ~ 80370491 (-) False LOC110516866
XR_005036285.1 mRNA downstream 848937 80286961 ~ 80347887 (-) False LOC110516867
XR_005036296.1 mRNA upstream 142749 81341914 ~ 81343353 (-) True LOC118938884
XM_036945525.1 mRNA upstream 186865 81386030 ~ 81422464 (-) False LOC110517956
XM_036945524.1 mRNA upstream 186865 81386030 ~ 81495207 (-) False LOC110517956
XM_036945528.1 mRNA upstream 334957 81534122 ~ 81554017 (-) False LOC110511600
XM_036945529.1 mRNA upstream 334957 81534122 ~ 81554017 (-) False LOC110511600
TU1520239 other downstream 77102 81117200 ~ 81119722 (-) False LOC110515349
TU1520240 other downstream 77102 81117200 ~ 81119722 (-) True LOC110515349
TU1520033 other downstream 190752 81004872 ~ 81006072 (-) True G1330168
TU1519998 other downstream 239034 80955531 ~ 80957790 (-) False G1330142
TU1519999 other downstream 239034 80955531 ~ 80957790 (-) True G1330142
TU1520322 other upstream 51112 81250277 ~ 81251251 (-) True G1330352
TU1520489 other upstream 203755 81402920 ~ 81432077 (-) False LOC110517956
TU1520488 other upstream 251466 81450631 ~ 81495098 (-) True LOC110517956

Expression Profile