RNA id: TU1434871



Basic Information


Item Value
RNA id TU1434871
length 623
lncRNA type inter_gene
GC content 0.37
exon number 4
gene id G1256050
representative False

Chromosome Information


Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 9374124 ~ 9375271 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATATATAACTGACTAGagaggtgtaatatagtactGACTAGagaggtgtaatatagtactGACTAGagaggtgtaatatagtactGACTAGagaggtgtaatatagtactGACTAGagaggtgtaatatagtactGACTAGAGAGgtgtaatatagtactGACTAGAGAGGTGTTATATAGTACTGACTAGagaggtgtaatatagtactGACTAGagaggtgtaatatagtactGACGAGAGAGGTGTAATATATAACTGACTAGAGAGGTGTTATATAGTACTGACTAGagaggtgtaatatagtactGACTAGAGAGGTGTTATATAGTACTGACTAGagaggtgtaatatagtactGACTAGagaggtgtaatatagtactGACTAGAGAGgtgtaatatagtactGACTAGAGAGGTGTTATATAGTACTGACTAGAGAGGTGTTATATAGTACTGACTAGAGAGGGGTAATATAGTACTGACTATAGAGGTGTTAAATATAACTGACTAGagaggtgtaatatagtactGACTAGAGAGGTGTTATACTGTCTTCATGTGTGTTATACTGTcttcaggcaggcagacaggcagacagacagaaagacagacagacgg

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU1434825 lncRNA downstream 55337 9318525 ~ 9318787 (-) True G1256008
TU1434791 lncRNA downstream 86293 9287549 ~ 9287831 (-) True G1255974
TU1434783 lncRNA downstream 93752 9280140 ~ 9280372 (-) True G1255966
TU1434779 lncRNA downstream 98177 9275745 ~ 9275947 (-) True G1255962
TU1434730 lncRNA downstream 178606 9194021 ~ 9195518 (-) True G1255914
TU1434981 lncRNA upstream 99053 9474324 ~ 9474694 (-) True G1256145
TU1435010 lncRNA upstream 143825 9519096 ~ 9519380 (-) True G1256172
TU1435012 lncRNA upstream 145393 9520664 ~ 9522332 (-) True G1256174
TU1435014 lncRNA upstream 147521 9522792 ~ 9522996 (-) True G1256176
TU1435062 lncRNA upstream 180185 9555456 ~ 9556132 (-) False G1256224
XM_036945570.1 mRNA downstream 409911 8963472 ~ 8964213 (-) True LOC110514162
XM_036945717.1 mRNA downstream 747930 8597494 ~ 8626194 (-) False LOC110489554
XM_036945718.1 mRNA downstream 747930 8597494 ~ 8626194 (-) True LOC110489554
XM_036945720.1 mRNA downstream 761978 8597494 ~ 8612146 (-) False LOC110489554
XM_036945719.1 mRNA downstream 762307 8597494 ~ 8611817 (-) False LOC110489554
XM_021562289.2 mRNA upstream 43080 9418351 ~ 9422023 (-) True LOC110489563
XM_021562297.2 mRNA upstream 845226 10220497 ~ 10246539 (-) False LOC110489568
XM_021562299.2 mRNA upstream 845226 10220497 ~ 10246539 (-) False LOC110489568
XM_021562296.2 mRNA upstream 845226 10220497 ~ 10246556 (-) False LOC110489568
XM_021562295.2 mRNA upstream 845226 10220497 ~ 10246560 (-) True LOC110489568
TU1434531 other downstream 350121 9023584 ~ 9024003 (-) True G1255735
TU1432811 other downstream 2047668 7325712 ~ 7326456 (-) True G1254214
TU1431731 other downstream 2911564 6462202 ~ 6462560 (-) True G1253278
TU1431674 other downstream 2966835 6407071 ~ 6407289 (-) True G1253229
TU1430304 other downstream 4477639 4895622 ~ 4896485 (-) True LOC110490882
TU1434982 other upstream 102542 9477813 ~ 9478818 (-) True G1256146
TU1435537 other upstream 498248 9873519 ~ 9874742 (-) True G1256654
TU1435807 other upstream 912402 10287673 ~ 10295990 (-) True LOC110489570
TU1436701 other upstream 1443172 10818443 ~ 10818911 (-) True G1257642
TU1438430 other upstream 3135601 12510872 ~ 12533388 (-) False LOC110489593

Expression Profile


TU1434871 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5.
End of interactive chart.

TU1434871 Expression in each Bioproject

Bar chart with 2 bars.
TU1434871 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 80.
End of interactive chart.