RNA id: TU1435815


Basic Information

Item Value
RNA id TU1435815
length 246
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1256899
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 10184036 ~ 10184281 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catgaaacagagataccttatttacataagtattcagaccctttgctatgaaagtcgaaattgagctcaggtgcatcctgtttccattgatcatccttgaactgtttctacaacttgattggagtccacctgtggtaaattaaattgatttgacatgatttggaaaggcacacacctgtctatataaggtcccacagttgacagtgcatgtcggagcaaaaaccaagccatgaggtcatctgaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1435814 lncRNA downstream 497 10183331 ~ 10183539 (-) True G1256898
TU1435812 lncRNA downstream 5354 10177502 ~ 10178682 (-) True G1256896
TU1435657 lncRNA downstream 90615 10090197 ~ 10093421 (-) False G1256764
TU1435659 lncRNA downstream 92805 10090197 ~ 10091231 (-) True G1256764
TU1435520 lncRNA downstream 340854 9842587 ~ 9843182 (-) True G1256644
TU1435824 lncRNA upstream 7732 10192013 ~ 10192839 (-) False G1256905
TU1435826 lncRNA upstream 7732 10192013 ~ 10192839 (-) False G1256905
TU1435828 lncRNA upstream 7732 10192013 ~ 10192839 (-) False G1256905
TU1435829 lncRNA upstream 7732 10192013 ~ 10192839 (-) True G1256905
TU1435809 lncRNA upstream 31365 10215646 ~ 10216696 (-) True G1256893
XM_021562289.2 mRNA downstream 762013 9418351 ~ 9422023 (-) True LOC110489563
XM_036945570.1 mRNA downstream 1219823 8963472 ~ 8964213 (-) True LOC110514162
XM_036945717.1 mRNA downstream 1557842 8597494 ~ 8626194 (-) False LOC110489554
XM_036945718.1 mRNA downstream 1557842 8597494 ~ 8626194 (-) True LOC110489554
XM_036945720.1 mRNA downstream 1571890 8597494 ~ 8612146 (-) False LOC110489554
XM_021562297.2 mRNA upstream 36216 10220497 ~ 10246539 (-) False LOC110489568
XM_021562299.2 mRNA upstream 36216 10220497 ~ 10246539 (-) False LOC110489568
XM_021562296.2 mRNA upstream 36216 10220497 ~ 10246556 (-) False LOC110489568
XM_021562295.2 mRNA upstream 36216 10220497 ~ 10246560 (-) True LOC110489568
XM_036943685.1 mRNA upstream 72062 10256343 ~ 10296042 (-) False LOC110489570
TU1435537 other downstream 309294 9873519 ~ 9874742 (-) True G1256654
TU1434982 other downstream 705218 9477813 ~ 9478818 (-) True G1256146
TU1434531 other downstream 1160033 9023584 ~ 9024003 (-) True G1255735
TU1432811 other downstream 2857580 7325712 ~ 7326456 (-) True G1254214
TU1431731 other downstream 3721476 6462202 ~ 6462560 (-) True G1253278
TU1435807 other upstream 103392 10287673 ~ 10295990 (-) True LOC110489570
TU1436701 other upstream 634162 10818443 ~ 10818911 (-) True G1257642
TU1438430 other upstream 2326591 12510872 ~ 12533388 (-) False LOC110489593
TU1438431 other upstream 2327202 12511483 ~ 12533388 (-) True LOC110489593
TU1439729 other upstream 3157772 13342053 ~ 13360778 (-) False LOC110489604

Expression Profile