RNA id: TU1435824


Basic Information

Item Value
RNA id TU1435824
length 659
lncRNA type inter_gene
GC content 0.52
exon number 3
gene id G1256905
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 10192013 ~ 10192839 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagagacaggcagacagacagagacaggtagcaatagacagacagagacaggcagacagacagagacaggcagacagacagagaccggtagcaatagacaggcagagacaggcagacagacagagacaggtagcaatagacaggcagagacaggcagacagacagagacaggtagcaatagacagacagagacaggcagacagacagagacaggcagacagacagagacaggtagcaatagacagacagagacaggcagacaggcagagacaggtagcaatagacaggcagagacaggcagacagacagagacaggtagcaatagacagacagagacaggcagacagacagagacaggcagacagacagagacaggtagcaatagacagacagagacaggcagacaggcagagacaggtagcaatagacaggcagagacaggcagacagacagagacaggtagcaatagacaggcagagacaggcagacagacagagacaggtagcaATAGACTGGcagatacaggcagacagacagagacaggtagcaatagacaggcagagacaggcagacagacagagacaggtagcaATAGACAGGcagatacaggcagacagacagagacaggtagcaatagacagacagagacgggtAGACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1435815 lncRNA downstream 7732 10184036 ~ 10184281 (-) True G1256899
TU1435814 lncRNA downstream 8474 10183331 ~ 10183539 (-) True G1256898
TU1435812 lncRNA downstream 13331 10177502 ~ 10178682 (-) True G1256896
TU1435657 lncRNA downstream 98592 10090197 ~ 10093421 (-) False G1256764
TU1435659 lncRNA downstream 100782 10090197 ~ 10091231 (-) True G1256764
TU1435809 lncRNA upstream 22807 10215646 ~ 10216696 (-) True G1256893
TU1435805 lncRNA upstream 26939 10219778 ~ 10282430 (-) True G1256889
TU1435846 lncRNA upstream 32960 10225799 ~ 10226303 (-) True G1256921
TU1435855 lncRNA upstream 72902 10265741 ~ 10266825 (-) True G1256929
TU1435854 lncRNA upstream 74034 10266873 ~ 10267907 (-) True G1256928
XM_021562289.2 mRNA downstream 769990 9418351 ~ 9422023 (-) True LOC110489563
XM_036945570.1 mRNA downstream 1227800 8963472 ~ 8964213 (-) True LOC110514162
XM_036945717.1 mRNA downstream 1565819 8597494 ~ 8626194 (-) False LOC110489554
XM_036945718.1 mRNA downstream 1565819 8597494 ~ 8626194 (-) True LOC110489554
XM_036945720.1 mRNA downstream 1579867 8597494 ~ 8612146 (-) False LOC110489554
XM_021562297.2 mRNA upstream 27658 10220497 ~ 10246539 (-) False LOC110489568
XM_021562299.2 mRNA upstream 27658 10220497 ~ 10246539 (-) False LOC110489568
XM_021562296.2 mRNA upstream 27658 10220497 ~ 10246556 (-) False LOC110489568
XM_021562295.2 mRNA upstream 27658 10220497 ~ 10246560 (-) True LOC110489568
XM_036943685.1 mRNA upstream 63504 10256343 ~ 10296042 (-) False LOC110489570
TU1435537 other downstream 317271 9873519 ~ 9874742 (-) True G1256654
TU1434982 other downstream 713195 9477813 ~ 9478818 (-) True G1256146
TU1434531 other downstream 1168010 9023584 ~ 9024003 (-) True G1255735
TU1432811 other downstream 2865557 7325712 ~ 7326456 (-) True G1254214
TU1431731 other downstream 3729453 6462202 ~ 6462560 (-) True G1253278
TU1435807 other upstream 94834 10287673 ~ 10295990 (-) True LOC110489570
TU1436701 other upstream 625604 10818443 ~ 10818911 (-) True G1257642
TU1438430 other upstream 2318033 12510872 ~ 12533388 (-) False LOC110489593
TU1438431 other upstream 2318644 12511483 ~ 12533388 (-) True LOC110489593
TU1439729 other upstream 3149214 13342053 ~ 13360778 (-) False LOC110489604

Expression Profile