RNA id: TU1439401


Basic Information

Item Value
RNA id TU1439401
length 2198
lncRNA type antisense_over
GC content 0.43
exon number 3
gene id G1259876
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 13573153 ~ 13576134 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTTTGTTGATCTAATTTATTATCCTATCTCATGATGAAACACACTGAAGTTTGCAGTCCATCCACTGAAAAAAAGAAAGGTCTCTCAAACGACTTTCCCTGACACGCAGGTGACACGTGTGTGGGACCGGCCAGTCTCCAGTCCTACATGCTGGGGCAGGTGTGCGGAGCTTGGTTCTACTCGTCATTGTctgactcctcctcttcctggctGATCTGGAAGTATCTCAGCTCGTAGGTCTCCTTGTCTGACGCCACGACTCTCAGCCAATCACGGAGGTTGTTCTTCTTCAGGTACTTCTTGGTCAGGTATTTCAGGTACCTTTAGAGAACTGCTTCTGTGACGTGACGTTGATCTTGTTCTTCAGGCGGGCGATCTCGATTACATTCGCCAGATTTCCTGTCTTGCCGTTGACTTTTACCCTCTCTTTGAGGAATGTTTCCTGTTGGACAGAGCACAGTGACACTAGGGAAGAGAACCCTAGGGTTTGAGCTAGGGAATGGAGCCCTAGTAAAGTTGGCCGAGTCCAAAATGCCATCCTCCACAGGGTGGGTCAGGTCCAGGGTGAACTTCCAGGACACCCCCCTCTTGGTCCTCTTGACCACAGTCTGTTTCTTCTGCTTTAGCTAGGGAAAACAACCATGGCATTCAGATCATAGAAATATAAACGACGGGAATGATTCTGATCGCCATGACAGGCATTCCTCAATCTAATGTTCCTCCTGATTCTAAACCATGGCTCTCAGATAGAATAGGGATTAAGACAACATGATTCAGTTTTCCTTAGACTAGAGTAGTGTaatacaggggtgtcaaactcattccagagGGCCTAGTGTCTACTGGTTTTGGGGTTTTCATTTCAATTAAGAccaagacaaccaggtgaggggagcgCTTTACTAAATGGTGACCTTAATCCACCttaagtacaagggaggagcaaaatccTGCAGACACTCGCCCCTCCGTGGAATGAGAATAGCAAATTCCCCTTTATTATACGGCAGTGGATCTAATTCACACTGACCATCAATCCAAAGGtagatcaaatgtatttatgccATTGCAAGTGAAGAGAGGACCCCAAATGTATActtataaaataaacaaatattttaaatTGGGAAAACCTCTTGAATCTATGCTCGGAAATTACTTTAGAGCGTTTCTCAAACTCAGTGCTGGGGTGGACCGAGGGctgcacattttggttttagccctagcactacacagctgattcaaataatcaaaacgTGACAAAACTTgacattaataaaacctccctgcaacctaaaaatgtacaTTCCCTACACTGGCTAAATTTTCACTTCCGTTATCCGAACATTAAAAAAATGATATTTTAAAcggtcaggaaacgtatggctttgttcccagaaccaatgggaaaccaaaaacgtatGTTCCCACAACTTTCAAGGAAActaatgtgctagctgggaagggTTTGGAACCTCACCCTGGTAAGGTCATGGGTATGCTCAAAATGGCTGTCAGTCCTGACTTGAATGGCATTTTTGTTCGGCGGTTTGTACTTCTCATCAGGCTGTCAGTGAATAGATACAGCCTTTTCAAAATACAATCGCAGGAAATATGTTTGGAAAGCAAATTACAACTGGTGAAAAGACTAATTTGCCAGTTGAAGTTACATTTTTTTTCCTCAACTGACAAACCGCACTGCTTTTTCAAAGTAGTTCAGGCCTACCTTGAGACCATCACTGGTATGGTGAGAAGGCTACGCATATTTATGCTAtcttcattgggtgagtcagtatCACTGGAAAGTTGATTTAGTGGCCTATACTATTTATTTCCTCCCAATGTACTTTTTTAAAGActgagccaattgtgtgccaccctatgggactcccaatcctgGGGATGttatgcagcctggatttgaaccaggtactgcagtgccttagacagctgtgacACTCATTTGTGTCTCCCTTTTATTGGCCCTGGGCCAGGTCTTGACCATGGCCCAGATTCCCAAAAGCATTCTAAGGCTACATTTTAATCTTAAAATAAGATCCTATGGTTCTAACAATTAATTTAGCCTAAAATGCTTTTGGTAATCTGGGCCTAGGTAGTTTGAGTGTCAGATTAGCCACTCTTGTGTAGTATTACAAAAAATAGTCTCCTGTCATGTAGGCCTAAATGAATTAGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1439380 lncRNA upstream 21218 13539965 ~ 13551935 (+) True si:ch211-230g15.5
TU1439382 lncRNA upstream 36919 13535824 ~ 13536234 (+) True G1259864
TU1439377 lncRNA upstream 41536 13531374 ~ 13531617 (+) True G1259861
TU1439367 lncRNA upstream 48819 13523016 ~ 13524334 (+) False G1259854
TU1439397 lncRNA downstream 6954 13582569 ~ 13587128 (+) False G1259875
TU1439398 lncRNA downstream 6954 13582569 ~ 13584198 (+) True G1259875
TU1439439 lncRNA downstream 43088 13618703 ~ 13622599 (+) True G1259908
TU1439462 lncRNA downstream 92517 13668132 ~ 13668348 (+) True G1259931
TU1439525 lncRNA downstream 225184 13800799 ~ 13803181 (+) False G1259980
XM_036943745.1 mRNA upstream 21200 13532602 ~ 13551953 (+) False si:ch211-230g15.5
XM_036943742.1 mRNA upstream 21200 13532605 ~ 13551953 (+) False si:ch211-230g15.5
XM_036943743.1 mRNA upstream 21200 13532605 ~ 13551953 (+) False si:ch211-230g15.5
XM_036943740.1 mRNA upstream 21200 13532607 ~ 13551953 (+) False si:ch211-230g15.5
XM_036943744.1 mRNA upstream 21200 13532609 ~ 13551953 (+) False si:ch211-230g15.5
XM_036943758.1 mRNA downstream 123662 13699277 ~ 13709450 (+) True LOC110489618
XM_036943661.1 mRNA downstream 146843 13722458 ~ 13725519 (+) False LOC100135979
NM_001124317.1 mRNA downstream 146964 13722579 ~ 13725519 (+) True LOC100135979
LOC118936270 mRNA downstream 150664 13726279 ~ 13744753 (+) True LOC118936270
XR_005036303.1 mRNA downstream 170721 13746336 ~ 13758266 (+) False LOC110490824
TU1439308 other upstream 92282 13468015 ~ 13480871 (+) False armc3
TU1438872 other upstream 388586 13184293 ~ 13184567 (+) True G1259481
TU1438357 other upstream 909298 12645777 ~ 12663855 (+) False LOC110489589
TU1438296 other upstream 933688 12630470 ~ 12639465 (+) False LOC110489591
TU1438304 other upstream 956477 12615999 ~ 12616676 (+) False LOC110489591
TU1439503 other downstream 171052 13746667 ~ 13758202 (+) True LOC110490824
TU1439561 other downstream 293700 13869315 ~ 13870230 (+) True G1260013
TU1439645 other downstream 385886 13961501 ~ 13961816 (+) True G1260074
TU1440249 other downstream 634750 14210365 ~ 14215929 (+) True LOC110489635
TU1440357 other downstream 784482 14360097 ~ 14362940 (+) True LOC110489644

Expression Profile