RNA id: TU1439596


Basic Information

Item Value
RNA id TU1439596
length 301
lncRNA type antisense_over
GC content 0.48
exon number 1
gene id G1260031
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 13852116 ~ 13852416 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CaaaaagctgtgtgtgtgagtaaagAGCTTCAGTGACAGTACTGTACCAGGTGTTGACGCTCCAGACCGAGGTGGTGTGACCACGTCTCCCGCGTTAGCAGCACCGGAGGCTCAGCTGGGACAGCCGACTCCTGGTCTGACGTCATGTGACGTCTGAACTCCTCTCAGGGATGTGTGCTGCTGCTCAACAGGGAAGCTGGTTGGGGGAtatatctaaactcagcaaaaaaataaacatccattTTTCAGCACCctatctttcaaagataattcgtaaaaatccaaataacttcacagatct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1439595 lncRNA upstream 4253 13847248 ~ 13847863 (+) True G1260030
TU1439594 lncRNA upstream 7480 13843731 ~ 13844636 (+) True G1260029
TU1439527 lncRNA upstream 27715 13800799 ~ 13824401 (+) True G1259980
TU1439525 lncRNA upstream 48935 13800799 ~ 13803181 (+) False G1259980
TU1439462 lncRNA upstream 183768 13668132 ~ 13668348 (+) True G1259931
TU1439600 lncRNA downstream 3548 13855964 ~ 13856231 (+) True G1260035
TU1439601 lncRNA downstream 4033 13856449 ~ 13856730 (+) True G1260036
TU1439604 lncRNA downstream 6472 13858888 ~ 13859144 (+) True G1260039
TU1439605 lncRNA downstream 8040 13860456 ~ 13860761 (+) True G1260040
TU1439607 lncRNA downstream 9707 13862123 ~ 13863067 (+) True G1260041
XR_005036303.1 mRNA upstream 93850 13746336 ~ 13758266 (+) False LOC110490824
LOC118936270 mRNA upstream 107363 13726279 ~ 13744753 (+) True LOC118936270
XM_036943661.1 mRNA upstream 126597 13722458 ~ 13725519 (+) False LOC100135979
NM_001124317.1 mRNA upstream 126597 13722579 ~ 13725519 (+) True LOC100135979
XM_036943758.1 mRNA upstream 142666 13699277 ~ 13709450 (+) True LOC110489618
XM_036943768.1 mRNA downstream 29245 13881661 ~ 13913123 (+) False LOC110489621
XM_021562356.2 mRNA downstream 56004 13908420 ~ 13913203 (+) False LOC110489621
XM_036943769.1 mRNA downstream 79248 13931664 ~ 13948329 (+) True LOC110489622
XM_036945608.1 mRNA downstream 106626 13959042 ~ 13960551 (+) True LOC118938945
XM_036945573.1 mRNA downstream 135940 13988356 ~ 13999764 (+) True LOC110490921
TU1439503 other upstream 93914 13746667 ~ 13758202 (+) True LOC110490824
TU1439308 other upstream 371245 13468015 ~ 13480871 (+) False armc3
TU1438872 other upstream 667549 13184293 ~ 13184567 (+) True G1259481
TU1438357 other upstream 1188261 12645777 ~ 12663855 (+) False LOC110489589
TU1438296 other upstream 1212651 12630470 ~ 12639465 (+) False LOC110489591
TU1439561 other downstream 16899 13869315 ~ 13870230 (+) True G1260013
TU1439645 other downstream 109085 13961501 ~ 13961816 (+) True G1260074
TU1440249 other downstream 357949 14210365 ~ 14215929 (+) True LOC110489635
TU1440357 other downstream 507681 14360097 ~ 14362940 (+) True LOC110489644
TU1440507 other downstream 814243 14666659 ~ 14668539 (+) True G1260745

Expression Profile