RNA id: TU1441492


Basic Information

Item Value
RNA id TU1441492
length 1643
RNA type TUCP
GC content 0.39
exon number 1
gene id G1261562
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 15077710 ~ 15080745 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aattagaacttgcacaattggtggctgactaaatactttttttgccccactgtatttagcttacgttgattggactaaattgtttttggtatcttttaattgttattgtattagactaagcataggtgatttgatgaagTTGAAATGTTCTTGTTCTCTTTGTGACTAgaggtaactctctgtggttctaaatcaatagttgttcagTAGTCctaaaatgtcagaaacattaacttgattgactatgctgtaggtcatgtaactgtttgttacattcaatatgctttgtggtcttcaccagacagatgttgctctctggttttgtgatgaaacaaaggtctGGTTGagtttattctgccactgtgtcttctcattgtctcggcctttaggcctacagtatatatcacagtgtcaaggcatatgaactaacaggttacagagcaaacaaagcaattatcacaacatataGGTTGGAATGTGGCTTTTCtctctggcttggcttccccagtgattttacccacgcaccactaCTAGTTTGGGGGAATACAATTAACTATTGAGTTGGAAAATGTACTGTGGATACAAATATCCCTGTGAGCTTCCCAAGCCCATGTTGCTTAGGGTTAACAGCATAAATTGTATATCAAtaatattatactgaacaaaaatgtaaacataacttgtaaagtgttggtcccctgttaaatgaactgaaataaaatatcccagaaatgtttaatgctcacaaaaagcttatttttcgcACAAGTTTTGTGCACTAATTTGTTTACATTTCTGTTAataaacatttctcctttgccaagataatccatccacctaacaggtgtggcatatcaagaagctgattaaacagcatgatcattacacaggtgcaccttgtactggggacattaaaaggccactctgaaatgtgcagttttgtcacataacccAATGCCACAGAATATTTGAGGGAGCGttcaattggcatactgactgcaggaatgtccaccagaggaatgtccaccagaggaatgtccaccagaggaatgtccaccagaggaatgtccaccagaggaatgtccaccagaggaatgtccaccagtggaatgtccaccagaggaatgtccaccagaggaatgtccaccagaggaatgtccaccagaggaatgtccaccagaggaatgtccaccagagctagtGCCAGAGAATTTCATCCGGGTTCTTCACTTGTAGGAGTATTTCTgactgtaataaagcccttttgtggggaaaaactaattctgattggctgggcctggctcccaagtaaTGAATTTGTAGTGAATTTccatgaataaaataaataaataacagaacaGTCTCAACAGCCAATTATTGCAGGATATCCAAGGACAtgcattcatgtgaaatccaaagaTCAGGGCCTaatcaattcatttcaattgactgatgtccttctacgaactgtaacgcagtaaaatcttttaaattactacatgttacgtttatatttttgttcagtgtacatgtaTTGTATCACACCCTCTAAACTTATTCCACGGATCCCTTGGCCAAATTACTGGAATCTGTTGGGaatattaattaaaaaaaatactgctccccactttgagaacccctgc

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU1441459 lncRNA downstream 35084 15041316 ~ 15042626 (-) True G1261533
TU1441448 lncRNA downstream 43387 15033781 ~ 15034323 (-) True G1261527
TU1441372 lncRNA downstream 57736 14937736 ~ 15019974 (-) True LOC110490926
TU1441423 lncRNA downstream 113518 14963936 ~ 14964192 (-) True G1261502
TU1441376 lncRNA downstream 151405 14920638 ~ 14926305 (-) True LOC110490927
TU1441494 lncRNA upstream 1156 15080508 ~ 15080745 (-) True G1261562
TU1441500 lncRNA upstream 1525 15080877 ~ 15081893 (-) True LOC110489670
TU1441505 lncRNA upstream 11437 15090789 ~ 15091010 (-) True G1261569
TU1441454 lncRNA upstream 16928 15096280 ~ 15097832 (-) False G1261529
TU1441451 lncRNA upstream 18688 15098040 ~ 15098716 (-) False G1261529
XM_021564348.2 mRNA downstream 53334 15018294 ~ 15024376 (-) False LOC110490926
XM_036943828.1 mRNA downstream 59821 14920400 ~ 15017889 (-) False LOC110490927
XM_036943830.1 mRNA downstream 59821 14920400 ~ 15017889 (-) False LOC110490927
XM_036943827.1 mRNA downstream 59823 14920400 ~ 15017887 (-) False LOC110490927
XM_036943829.1 mRNA downstream 74013 14920400 ~ 15003697 (-) False LOC110490927
XM_021562424.2 mRNA upstream 1433 15080785 ~ 15088209 (-) False LOC110489670
XM_036943847.1 mRNA upstream 12409 15091761 ~ 15095421 (-) False LOC110489668
XM_021562421.2 mRNA upstream 12409 15091761 ~ 15096036 (-) True LOC110489668
XM_036943836.1 mRNA upstream 29502 15108854 ~ 15137066 (-) True LOC110489663
XM_036943833.1 mRNA upstream 71649 15151001 ~ 15161411 (-) True flt3
TU1441211 other downstream 395818 14668621 ~ 14681892 (-) False qtrt2
TU1441213 other downstream 395818 14668621 ~ 14681892 (-) True qtrt2
TU1441113 other downstream 532234 14529869 ~ 14545476 (-) True LOC110489648
TU1441118 other downstream 599483 14459807 ~ 14478227 (-) False G1261237
TU1441117 other downstream 599483 14476286 ~ 14478227 (-) True G1261237
TU1441452 other upstream 18688 15098040 ~ 15098716 (-) True G1261529
TU1441538 other upstream 110194 15189546 ~ 15189816 (-) True G1261602
TU1441760 other upstream 426346 15505698 ~ 15506198 (-) True G1261796
TU1442597 other upstream 726898 15806250 ~ 15807617 (-) True G1262503
TU1442531 other upstream 748999 15828351 ~ 15845141 (-) True LOC110489690

Expression Profile

TU1441492 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2.
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TU1441492 Expression in each Bioproject

Bar chart with 16 bars.
TU1441492 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
End of interactive chart.

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU304609 False 4482 TUCP 0.41 4 NC_053134.1 2291674 ~ 2296882 (+)