RNA id: TU1441671


Basic Information

Item Value
RNA id TU1441671
length 254
lncRNA type intronic
GC content 0.41
exon number 2
gene id G1261713
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 15427163 ~ 15427902 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtagtagcagtatcaATAGTAGCGGTAATAGTAGTTGTGGTAGCTGTAggagaggtagtagtagtagcagtagtagaagttgcagtggtagtagtaatagcagtgaTAGTGGAGgtagcagtagcaatagtagCGGTAATAGTAGTTGTGGTAactgtagtagaggtagtagtagtagcagtagaggtagtagtagtagcagtagtggaagtagtagtagcagtaatagcagtagtagtagtagtagtagtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1441648 lncRNA upstream 23140 15403784 ~ 15404023 (+) True G1261696
TU1441644 lncRNA upstream 25636 15401328 ~ 15401527 (+) True G1261692
TU1440974 lncRNA upstream 34120 15392817 ~ 15393043 (+) True G1261134
TU1440972 lncRNA upstream 36579 15390362 ~ 15390584 (+) True G1261132
TU1440968 lncRNA upstream 39389 15387456 ~ 15387774 (+) True G1261128
TU1441687 lncRNA downstream 32178 15460080 ~ 15474988 (+) True G1261729
TU1441747 lncRNA downstream 62180 15490082 ~ 15490292 (+) True G1261783
TU1441770 lncRNA downstream 90094 15517996 ~ 15518212 (+) True G1261806
TU1441778 lncRNA downstream 95884 15523786 ~ 15526928 (+) False G1261814
TU1441782 lncRNA downstream 95884 15523786 ~ 15529777 (+) False G1261814
XM_036943853.1 mRNA upstream 61403 15345480 ~ 15365760 (+) True LOC110489655
XM_036943834.1 mRNA upstream 234113 15166247 ~ 15193050 (+) False LOC110489660
XM_036943835.1 mRNA upstream 235676 15166725 ~ 15191487 (+) False LOC110489660
XM_021562418.2 mRNA upstream 279329 15142985 ~ 15147834 (+) False LOC110489664
XR_002468610.2 mRNA upstream 286386 15137323 ~ 15140777 (+) False LOC110489665
XM_021562450.2 mRNA downstream 104568 15532470 ~ 15534780 (+) True LOC110489682
XM_036943863.1 mRNA downstream 268994 15696896 ~ 15704922 (+) False LOC110489686
XM_021562453.2 mRNA downstream 268994 15696896 ~ 15706550 (+) False LOC110489686
XR_002468612.2 mRNA downstream 268994 15696896 ~ 15706550 (+) False LOC110489686
XR_005036051.1 mRNA downstream 268994 15696896 ~ 15706550 (+) False LOC110489686
TU1440825 other upstream 232218 15193012 ~ 15194945 (+) False LOC110489660
TU1440827 other upstream 232218 15193012 ~ 15194945 (+) True LOC110489660
TU1440741 other upstream 405110 15020992 ~ 15022053 (+) True G1260946
TU1440672 other upstream 513040 14905420 ~ 14914123 (+) True LOC110489673
TU1440507 other upstream 758624 14666659 ~ 14668539 (+) True G1260745
TU1441924 other downstream 269023 15696925 ~ 15706539 (+) False LOC110489686
TU1441927 other downstream 269023 15696925 ~ 15704274 (+) False LOC110489686
TU1441984 other downstream 308028 15735930 ~ 15736417 (+) True G1261980
TU1442095 other downstream 465066 15892968 ~ 15894164 (+) False mcmdc2
TU1446004 other downstream 3432209 18860111 ~ 18862511 (+) True LOC110489737

Expression Profile