RNA id: TU1441782


Basic Information

Item Value
RNA id TU1441782
length 3812
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G1261814
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 15523786 ~ 15529777 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAAAGGGAGCCATGCTTTGCAGAGCATCGCTCACACTGGTAGAATCCGCTACTCGCCCGCCGGAGTCCCCTGATTGTCCATCATGACACCGAGATAACCGGGAATAGGCCTACACGCCGTTTGCTAACAACAAAACGAATCACACCACACAATGATGTGAAAGAAAACAAAAAGCGAATGGATACACGACAATACCATGGGACCGACCGTCTGGCCTGCGAGAGAGGGTGTTTGATGGAGGAATACGACGTGGTTGAAGTTTTTGCCAAAACAGACATCATTTGAAAAAGATCAAATGGCCCGTCCCCCTTTTTGCCTCCGGAGACGGATTCGGACTAACCATCAGTTTGAATCTAGCCCCCAAAAACAGTGCTAGAGACGACTTTAACCCATTGCGCACGGGTGTCACCAAGCTCAATGGCCGCCGTAGTTCCATTtttaatagtttttttttctaTCAAATTACATTAAATTGTCATGGTGGTGTAATGTATATAGCCTACATTTATCAGCAGCTATGTAACCTTCCATTCCAGAATGCCACTCCAACTTCAAAGCACACTGACATCGCCACATAACTATTCGCACTGAAGGTCTGAAGGAACGGGTGTTGGTTAGTCTATATTGAACAAGGAATATTAGGGGCGGAAATGGCAAATAAGGAATGTTATGGGTGGATATGGCAAaatgtagcacacacacacacactgagtcttCTGAGGTTCTAGTTCTCCGTGTTCACAGCGGACCTTGATTTAATGTCTTACAATTAAGGCACGCGGTGAATGCCAAGAGCGGAGCCTGCTGTCATCTACGCGAGCGCACACAGCTTTCACTAAAACGACATACTAAAGCGATAACGGAAAAGGTTTGTGTCTGCAATTGTTGTCTGCAAATTCCCCTGTAGTCTATGTTGTATCGTTTTCtttttttcagagtaaataaagCACCCAATACTACCAGCTCATGTCTTCAAGTTATGATAACTGATGTCATTTCAAATGCATGTAGCCTACGCTGTCGATATTCAACATTGTCTATTGCAGCTAAAACATATGCAGCTTAAACGTGTTAAAATATGTGGGAGGATGTTGTAAATGTGCCCTGTGGTCGAGTGTAAATGAAGGACCTTTGGTTGAGGTAGAGGCCTTGCTTACACACGATCCGCTCTCAAGGCGCTGTCCACCACCACTGGTGCTGAAACCAAGAGCAGCCCATTTTGTTTTAGTAGGCCTGCGCTATACGCGAACGCGTCAGAATAATATTATTATACACGAAATATACAGTAAGCTATTATATTGAATAGGCCTACACGAAAGCAGGGCACAGACGGATTTATCAAACAAAGGCACACAGCCTACATGCAGACCCACGCATACATATAAACGCACATCAGGACTCACATAaatatgcacacaaacacacaggtccACAAGAAGACACATAAACAGTTACAGCCACACAGTTCTACATTTCACTTAAAAATAGTAGCCTTCTTGTCTCCTTGTGAGGTTTACGTGTAATGACATTTGCAAGCAGTGACAACATAGCCTAATGTAACGATCAACCCCAATCTGTAGCCTCCTATACATGGGGTACGTAGGCTAATCCTTAGGCCTGCATATTTATTCACCTAGGATAATTTGAGTCAGAATCTGAACATATGATTCAGATTTAAATGTAGACTTAATCTCGAAAAATTGGAAGAGATGtggaaattgtatttgtcaaaagcaTTTATTCATATCCAATCAAATAGGCCTATGTTGAATCGTTTCTTCGCGGTTTGCAGATTTACAATAATACCCATAGGTTTGCTATGCCACCTAGTGGCCGTTGCATACATGGGCAGACTTGAATACGTTGTACCCCAATGTAGGCCCCTACACAACACAGAGTGAGGGTCAACATGGCATGTCAAATCATTATATCAAGTTGACAAGGTTTTAGGGTAATCACTAGCATACAATATAGGATACAATTCACCAGAACCTTCTGTGGGAATGTGTATTTGATAGGTCAATAGGTATACAGTGTCGTCATTTTAAACAGCATTAAGTTGACTGTATCTTTCTCTGACAATCACATAGCACCACAGGAAGAAGAGAAGGCATTCCCAGGTGATGTAATACTTGTTTCACTACCCCCGGGTACCAGGGATTTGCTTGTTTTCCTATTTGACCAATGTTGAATTATGTCATgattcctctccctcctttggTCAGCAGTAGGAAATAACAGGAtgttggcagagagacagagagagagagattgaaaattAAAAAAGGGATTCTGCATAGTCTGTTAGAGACCCAGTAATATAAAGTCATCTTGGGTTATCTCCAGTGACTCTGGTGTTTGGCCAATGAAAATAACGGCATCCCTCCTGAGTACTTTTAGGTTATTCTACTGCTGCAGTGGGCCTCTATGAATGGGCCTCTATGAATGATCTCAGCCTCAAAAAGAGAGTCTGTTATCTCAGTGTTGAGTCGGTCAGGGCAGGACATGGCACAGTGAACTGACCTGACCTGAATACTAGCTACTCTAAGAGCAGAAGCAAACACAGTAATTGATCTGAAATGACCACTCTGGCATTGGGAAATTGCTACTCAACACAAAAATAAATCTCTTCATGTGATTGTGTTGCCATGCAACAAAACAGTTGTTCACATTCTAGCTGCCTATTAAACCAGAGGTTGACTGCTCTCTGATGATAGGAGTCTCCATAAAACAGCACTTAGACATCATTAATGCCCTAAGTGACATTCCTGGGGATAAGGCCGGTGGCTGTAATTCAGCTATAGGCACTTTAAAGTCATAGAGACGTCTACTCCATGGTTCACTTCACTCTGTCCTTGCAAGTTGCCtatgttttgaccagggcccaggcaCTCCGAGGCAGCTGGAGAGAGCAGAGATACGGATGAGCATATAATGACTGTCTTGTCTTTGGAATGGGGCAGATTGTTACGTGTCTATCTCCCTCTGTGCTGCACATGATTGTTGTTTAATAAACCTTTGAAAATGTAAGTTGTCTACCATATCCTTGTATTCATAACTTCCACACCTTGGGGAAATGTATGATTTCTGACAAGACATCACATATTATTGAATTATCATTTATTACATAAGTATAAACACATATCAAATGATATTCATGGTCGAACAACGCAGTTATTTTTCAACGCAGAAAATTGAGGAAGTTAAATACATTTCAATTCCTGGATTTCAATCTCCTCTAAATTGTCTCGAATTCTTTCGAATTTGTATCATGCTTGTCCATGTCTATTGTTGATAATACTTGCAATGATTTCTTCACACAAAAAATCCTGATAAATACATACCGTAGCTCTTATCATAGTGGTTGTTGTATGCCACCGTGTGGTAGAAATGACTTACTACATTAAGACTCGAATATGAGACGGAGAACGATTTTGACCCTGGGGATTCCCTCAGCACATTATAGCTCAGAGACAGATCACAGGAAAAACTGTAAATGTGTGTGATGACAGTTAATAGTCGATGTAGAGTGACCAGTTGGAGGATGgagacacaacaaacacacagtctcaaGACAGACATTTGGATCCATCATGTGTAGCTGGAATAGGAGCCATGTGGCCCTCTATTGAAGTATGAAGATTTCTGACACACTTTGATTTGGTGGTGAATTATCCCTTTATGATGTGCAATTAGACTCCTCAAGATATTTCTCCCATCTTTAATATGTAAAGAGTACTACACTCAACAATAATATCAATGCAAcgtgtaacatgtaaagtgttggtccaatgttttgtgagctaaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1441770 lncRNA upstream 5574 15517996 ~ 15518212 (+) True G1261806
TU1441747 lncRNA upstream 33494 15490082 ~ 15490292 (+) True G1261783
TU1441687 lncRNA upstream 48798 15460080 ~ 15474988 (+) True G1261729
TU1441671 lncRNA upstream 95884 15427163 ~ 15427902 (+) True G1261713
TU1441648 lncRNA upstream 119763 15403784 ~ 15404023 (+) True G1261696
TU1441822 lncRNA downstream 18579 15548356 ~ 15549609 (+) True G1261842
TU1441841 lncRNA downstream 32297 15562074 ~ 15562316 (+) True G1261858
TU1441884 lncRNA downstream 82453 15612230 ~ 15612449 (+) True G1261901
TU1441903 lncRNA downstream 94636 15624413 ~ 15627232 (+) True G1261919
TU1441906 lncRNA downstream 101127 15630904 ~ 15631211 (+) True G1261922
XM_036943853.1 mRNA upstream 158026 15345480 ~ 15365760 (+) True LOC110489655
XM_036943834.1 mRNA upstream 330736 15166247 ~ 15193050 (+) False LOC110489660
XM_036943835.1 mRNA upstream 332299 15166725 ~ 15191487 (+) False LOC110489660
XM_021562418.2 mRNA upstream 375952 15142985 ~ 15147834 (+) False LOC110489664
XR_002468610.2 mRNA upstream 383009 15137323 ~ 15140777 (+) False LOC110489665
XM_021562450.2 mRNA downstream 2693 15532470 ~ 15534780 (+) True LOC110489682
XM_036943863.1 mRNA downstream 167119 15696896 ~ 15704922 (+) False LOC110489686
XM_021562453.2 mRNA downstream 167119 15696896 ~ 15706550 (+) False LOC110489686
XR_002468612.2 mRNA downstream 167119 15696896 ~ 15706550 (+) False LOC110489686
XR_005036051.1 mRNA downstream 167119 15696896 ~ 15706550 (+) False LOC110489686
TU1440825 other upstream 328841 15193012 ~ 15194945 (+) False LOC110489660
TU1440827 other upstream 328841 15193012 ~ 15194945 (+) True LOC110489660
TU1440741 other upstream 501733 15020992 ~ 15022053 (+) True G1260946
TU1440672 other upstream 609663 14905420 ~ 14914123 (+) True LOC110489673
TU1440507 other upstream 855247 14666659 ~ 14668539 (+) True G1260745
TU1441924 other downstream 167148 15696925 ~ 15706539 (+) False LOC110489686
TU1441927 other downstream 167148 15696925 ~ 15704274 (+) False LOC110489686
TU1441984 other downstream 206153 15735930 ~ 15736417 (+) True G1261980
TU1442095 other downstream 363191 15892968 ~ 15894164 (+) False mcmdc2
TU1446004 other downstream 3330334 18860111 ~ 18862511 (+) True LOC110489737

Expression Profile