RNA id: TU1441841


Basic Information

Item Value
RNA id TU1441841
length 243
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G1261858
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 15562074 ~ 15562316 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGATATACATACATGTAGTCATAGAAGAAGATGATGGGGATATGGAATTGACATAAAAAACCAATAGAATGACCTCAAAATGACCTCATTTTCTTTTCAGACGTTCTATCCTAGACTAAAAACTGATGCATCATTTTCTTTGTGTTTGTCTTCAGATTTGGATATGGAAAAATAATCCACACGGGTGATACATTTATAGATCATCCGTTTACACGACTGGGCACTTTACCTGAATAAATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1441822 lncRNA upstream 12465 15548356 ~ 15549609 (+) True G1261842
TU1441782 lncRNA upstream 32297 15523786 ~ 15529777 (+) False G1261814
TU1441784 lncRNA upstream 32297 15523786 ~ 15529777 (+) True G1261814
TU1441778 lncRNA upstream 35146 15523786 ~ 15526928 (+) False G1261814
TU1441770 lncRNA upstream 43862 15517996 ~ 15518212 (+) True G1261806
TU1441884 lncRNA downstream 49914 15612230 ~ 15612449 (+) True G1261901
TU1441903 lncRNA downstream 62097 15624413 ~ 15627232 (+) True G1261919
TU1441906 lncRNA downstream 68588 15630904 ~ 15631211 (+) True G1261922
TU1441901 lncRNA downstream 99737 15662053 ~ 15662537 (+) True G1261918
TU1441900 lncRNA downstream 101771 15664087 ~ 15664766 (+) True G1261917
XM_021562450.2 mRNA upstream 27294 15532470 ~ 15534780 (+) True LOC110489682
XM_036943853.1 mRNA upstream 196314 15345480 ~ 15365760 (+) True LOC110489655
XM_036943834.1 mRNA upstream 369024 15166247 ~ 15193050 (+) False LOC110489660
XM_036943835.1 mRNA upstream 370587 15166725 ~ 15191487 (+) False LOC110489660
XM_021562418.2 mRNA upstream 414240 15142985 ~ 15147834 (+) False LOC110489664
XM_036943863.1 mRNA downstream 134580 15696896 ~ 15704922 (+) False LOC110489686
XM_021562453.2 mRNA downstream 134580 15696896 ~ 15706550 (+) False LOC110489686
XR_002468612.2 mRNA downstream 134580 15696896 ~ 15706550 (+) False LOC110489686
XR_005036051.1 mRNA downstream 134580 15696896 ~ 15706550 (+) False LOC110489686
XR_005036052.1 mRNA downstream 134580 15696896 ~ 15706550 (+) False LOC110489686
TU1440825 other upstream 367129 15193012 ~ 15194945 (+) False LOC110489660
TU1440827 other upstream 367129 15193012 ~ 15194945 (+) True LOC110489660
TU1440741 other upstream 540021 15020992 ~ 15022053 (+) True G1260946
TU1440672 other upstream 647951 14905420 ~ 14914123 (+) True LOC110489673
TU1440507 other upstream 893535 14666659 ~ 14668539 (+) True G1260745
TU1441924 other downstream 134609 15696925 ~ 15706539 (+) False LOC110489686
TU1441927 other downstream 134609 15696925 ~ 15704274 (+) False LOC110489686
TU1441984 other downstream 173614 15735930 ~ 15736417 (+) True G1261980
TU1442095 other downstream 330652 15892968 ~ 15894164 (+) False mcmdc2
TU1446004 other downstream 3297795 18860111 ~ 18862511 (+) True LOC110489737

Expression Profile