RNA id: TU1441903


Basic Information

Item Value
RNA id TU1441903
length 508
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id G1261919
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 15624413 ~ 15627232 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gTATTATAGTGGTATAAGtactgtagtggtataggtattgtagtggtataggtattgtagtggtataggtattgtagtggtataggtactgtagtggtataggcactgtagtggtataggtattgtagtggtatatgtattgtagtggtatatgtactgtagtggtataggtactgtagtggtataggtattgtagtggtatatgtattgtagtggtataggTATTATAGTGGTATAAGtactgtagtggtataggtATTGTAGTGGTATAGGTATTGTAGGGGTATAGGTATTGTGGTGGTATAGGTATTGTAGTGGTATAGgtactgtagtggtataggtattgtagtggtataggtactgtagtggtataggtactgtagtggtataggtactgtagtggtataggtactgtagtggtataggtactgtacactcttagaaaaaaagggtatTCCAAAAGGATTCTTCTGCTGTCCCCTTAGGAGAACCatatttggttccaggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1441884 lncRNA upstream 11964 15612230 ~ 15612449 (+) True G1261901
TU1441841 lncRNA upstream 62097 15562074 ~ 15562316 (+) True G1261858
TU1441822 lncRNA upstream 74804 15548356 ~ 15549609 (+) True G1261842
TU1441782 lncRNA upstream 94636 15523786 ~ 15529777 (+) False G1261814
TU1441784 lncRNA upstream 94636 15523786 ~ 15529777 (+) True G1261814
TU1441906 lncRNA downstream 3672 15630904 ~ 15631211 (+) True G1261922
TU1441901 lncRNA downstream 34821 15662053 ~ 15662537 (+) True G1261918
TU1441900 lncRNA downstream 36855 15664087 ~ 15664766 (+) True G1261917
TU1441935 lncRNA downstream 42316 15669548 ~ 15669921 (+) True G1261940
TU1441940 lncRNA downstream 44668 15671900 ~ 15674666 (+) False G1261941
XM_021562450.2 mRNA upstream 89633 15532470 ~ 15534780 (+) True LOC110489682
XM_036943853.1 mRNA upstream 258653 15345480 ~ 15365760 (+) True LOC110489655
XM_036943834.1 mRNA upstream 431363 15166247 ~ 15193050 (+) False LOC110489660
XM_036943835.1 mRNA upstream 432926 15166725 ~ 15191487 (+) False LOC110489660
XM_021562418.2 mRNA upstream 476579 15142985 ~ 15147834 (+) False LOC110489664
XM_036943863.1 mRNA downstream 69664 15696896 ~ 15704922 (+) False LOC110489686
XM_021562453.2 mRNA downstream 69664 15696896 ~ 15706550 (+) False LOC110489686
XR_002468612.2 mRNA downstream 69664 15696896 ~ 15706550 (+) False LOC110489686
XR_005036051.1 mRNA downstream 69664 15696896 ~ 15706550 (+) False LOC110489686
XR_005036052.1 mRNA downstream 69664 15696896 ~ 15706550 (+) False LOC110489686
TU1440825 other upstream 429468 15193012 ~ 15194945 (+) False LOC110489660
TU1440827 other upstream 429468 15193012 ~ 15194945 (+) True LOC110489660
TU1440741 other upstream 602360 15020992 ~ 15022053 (+) True G1260946
TU1440672 other upstream 710290 14905420 ~ 14914123 (+) True LOC110489673
TU1440507 other upstream 955874 14666659 ~ 14668539 (+) True G1260745
TU1441924 other downstream 69693 15696925 ~ 15706539 (+) False LOC110489686
TU1441927 other downstream 69693 15696925 ~ 15704274 (+) False LOC110489686
TU1441984 other downstream 108698 15735930 ~ 15736417 (+) True G1261980
TU1442095 other downstream 265736 15892968 ~ 15894164 (+) False mcmdc2
TU1446004 other downstream 3232879 18860111 ~ 18862511 (+) True LOC110489737

Expression Profile