RNA id: TU1442865


Basic Information

Item Value
RNA id TU1442865
length 544
RNA type TUCP
GC content 0.43
exon number 1
gene id G1262745
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 16276009 ~ 16276552 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtctcagaggtccgttaaaagcgcagagagcatcatgaagaacaaggaacagaccaggcaggtccgagatactgttgtgaagaagtttaaagccggatttggatacaaaaatatttcccaagctttaaacatcccaaggagcactgtgcaagtgataatattgaaatggaaggagtatcagaccactgcaaatctaccaagacctggccgcccctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgaggtgggagactgtccataggacaacaatcagttgtatattgcacaaatctggcctttatggaagagtggcaagaagaaagccatttcttaaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1442862 lncRNA downstream 1586 16273830 ~ 16274423 (-) True G1262742
TU1442861 lncRNA downstream 3072 16272703 ~ 16272937 (-) True G1262741
TU1442859 lncRNA downstream 5322 16270461 ~ 16270687 (-) True G1262739
TU1442857 lncRNA downstream 6743 16268851 ~ 16269266 (-) True G1262737
TU1442852 lncRNA downstream 22974 16252583 ~ 16253035 (-) True G1262732
TU1442878 lncRNA upstream 10491 16287043 ~ 16288360 (-) True G1262754
TU1442893 lncRNA upstream 27423 16303975 ~ 16304303 (-) True G1262767
TU1442898 lncRNA upstream 35920 16312472 ~ 16313390 (-) False G1262770
TU1442896 lncRNA upstream 36013 16312565 ~ 16314140 (-) False G1262770
TU1442899 lncRNA upstream 36013 16312565 ~ 16313390 (-) False G1262770
XM_036943878.1 mRNA downstream 56542 16206792 ~ 16219467 (-) True shrprbck1r
XM_021562478.2 mRNA downstream 56921 16206792 ~ 16219088 (-) False shrprbck1r
XM_021562477.2 mRNA downstream 98868 16161354 ~ 16177141 (-) True LOC110489701
XM_036943877.1 mRNA downstream 107846 16161354 ~ 16168163 (-) False LOC110489701
XM_021562468.2 mRNA downstream 131045 16129002 ~ 16144964 (-) True LOC110489698
XM_036943883.1 mRNA upstream 42347 16318899 ~ 16324594 (-) False LOC110489704
XM_036943884.1 mRNA upstream 42347 16318899 ~ 16324594 (-) False LOC110489704
XM_036943885.1 mRNA upstream 42347 16318899 ~ 16324594 (-) False LOC110489704
XM_036943886.1 mRNA upstream 42347 16318899 ~ 16324594 (-) True LOC110489704
XM_036943900.1 mRNA upstream 52393 16328945 ~ 16385430 (-) False LOC110489705
TU1442665 other downstream 240887 15989286 ~ 16035122 (-) True LOC110490929
TU1442531 other downstream 430868 15828351 ~ 15845141 (-) True LOC110489690
TU1442597 other downstream 468392 15806250 ~ 15807617 (-) True G1262503
TU1441760 other downstream 769811 15505698 ~ 15506198 (-) True G1261796
TU1441538 other downstream 1086193 15189546 ~ 15189816 (-) True G1261602
TU1443617 other upstream 369092 16645644 ~ 16646417 (-) True G1263444
TU1444458 other upstream 1185276 17461828 ~ 17462977 (-) True G1264199
TU1445577 other upstream 1907239 18183791 ~ 18184123 (-) True G1265249
TU1445798 other upstream 2299987 18576539 ~ 18580163 (-) False G1265456
TU1445796 other upstream 2300166 18576718 ~ 18579791 (-) False G1265456

Expression Profile