RNA id: TU1443601


Basic Information

Item Value
RNA id TU1443601
length 1772
lncRNA type antisense_over
GC content 0.41
exon number 1
gene id G1263432
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 16629302 ~ 16631754 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGCAAGCCATGGAGTAGGTCACGTATTTACGACATCATGCTGAAAGTGCATTTATTTAATACTTTCTTTGCACTTTGACCCAAAAAGAACTAGGAAACACAGCCTTTGAATGACGTGCTTTactttttaaacttttattttcattttaatGCGTAAATGACGCATAACCTGCCAAAGTTTTATTCAGATGAGTCACTGACAAAAGAGAACACTAGGCCTAAGACTCAGGAGCTCGAGTACTTCAACAAATGGGAGCAGCGGCTCCTTCCCTCGGCTCGGTGAAATTAACACAGAGGATTTGAAGGCCGAGATTCTTGGTGCCCTCAGAGCGGACATTTCATCTGTACTCAAATCGGAACTCAATGAGTCGCTCAGTGAGGACTTTAATTGTATTAAGTCAGCGTTTCAAGCAGTCAAGAATGAACTTgcaaagcaaacaacaagggtTCGTACTGAACTGGATACAGTTAAGAAAACGGTCTCGTCAACATGCTCGGACGACACGACTAACACAGTTAAGAAACTTGAAACTGATGTGACAAGCCTTAAGGAACAATGCATACCATTTACAAGGTTGTTTGCGAAGATCCAATGTCAGGATCATGGGGGTAGTAGAGGACTTTATCGGTCTCAAGTTATTGAAGGAAGCCATCCAAATGGATAAAGACGTCCTTGTAGACCGCACACATCGGGGCTCTCAAGCAAGAAAGCCCGGGGGAAAACCTTTGTGTAATTGAGGTTAAACTACACTACTTCAGGATTGTATTAATGTTCTTCGGCATGCCAGAGAATTTGGCCCACTTCGATGCAACGGAGCACCCATCTCTATCTTCCAAGACTATGCCCCCAGCGTTGCTTGTTACCATGAGGCTTTCAACGATGTTAAGAGTCAGCTCCATACCAAAccgactgtcacgacttccgccttgttctctccttgttcaggcggtgtTCGACATCACCGCATttctagccaccgccgatccacttttcattttccatttgttctgtctttgtcttatcACACCTGGCTTCACTCAACTAATTACTTGTTTATTATATAACCCTCTATTCCCCATGTTGTGTTTGTGATTGTTGATTGTAATTCGGTCCGTCTTTGTGGGCTCATGATGTTACTTTGTAAATTTGTCttttttgagtaaagtacgttgattactcatatctgctgtcctgcgcctgactctctacaccagctacacacaggacaTTTACACTGACTTTCGGTATGGTGTGGCTTTTCCTGCCCAGCTCCATATAACATACAACGGCACCAAGAAAGAGTTCCAAGACTCCCATAAGGCGATGGCCTTCGTAAAGGCGAACATTTTACCGAGGTCGGACTAAGCAAATAGCTGAATGTTCACCTATTTGGCGATTAGGATAATGGACAAATGTGTCTACCACTGCTGACTCAGTCTCTCTTTTGAAGATCGTGTATAGCGTTGCCAGTGGTATCAGTTGATGTTGTTATTATTAGGTAATGTTAGTGCCTTAGTTCTGGTGAGTCAATTCTCCttttgttttaatattttttgttttattacCATGAAGCTGCTCACTTCAATTTCTCGATTGTATATAAGCACAGTTCTATTATTAGGCAATGTCATTTCTTTAAAGATGTCGCTGCTGACTTAGTGGTATTGCTGTACGATGTGATTTAGAAAACATTTCATACTTTCTTTTAAAACAGCCTAGTTTGGGgttgtaaataagtatttcttATTCATTTATTATGCGCAACTTGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1443144 lncRNA downstream 1264 16582484 ~ 16628719 (-) True G1263002
TU1443167 lncRNA downstream 12266 16612010 ~ 16617717 (-) True LOC118938791
TU1443091 lncRNA downstream 51237 16578483 ~ 16578746 (-) True G1262954
TU1443076 lncRNA downstream 71272 16558481 ~ 16558711 (-) True G1262941
TU1443058 lncRNA downstream 88983 16540687 ~ 16541000 (-) True G1262924
TU1443606 lncRNA upstream 3757 16635511 ~ 16635840 (-) True G1263436
TU1443636 lncRNA upstream 29271 16661025 ~ 16661240 (-) True G1263456
TU1443638 lncRNA upstream 34039 16665793 ~ 16666028 (-) True G1263458
TU1443631 lncRNA upstream 44840 16676594 ~ 16677140 (-) False LOC110489710
TU1443640 lncRNA upstream 46146 16677900 ~ 16678101 (-) True LOC110489710
XR_005036054.1 mRNA downstream 12241 16612500 ~ 16617742 (-) False LOC118938791
XM_021562200.2 mRNA downstream 169914 16448445 ~ 16460069 (-) False hus1
NM_001160574.1 mRNA downstream 169922 16448449 ~ 16460061 (-) True hus1
XM_036943903.1 mRNA downstream 190066 16328945 ~ 16439917 (-) False LOC110489705
XM_021562490.2 mRNA upstream 36133 16667887 ~ 16677964 (-) False LOC110489710
XM_036943906.1 mRNA upstream 36133 16667887 ~ 16680822 (-) False LOC110489710
XM_021562491.2 mRNA upstream 37613 16669367 ~ 16677980 (-) False LOC110489710
XM_021562492.2 mRNA upstream 54887 16686641 ~ 16690526 (-) True dph2
XM_021564274.2 mRNA upstream 63794 16695548 ~ 16703091 (-) True LOC110490827
TU1442865 other downstream 353431 16276009 ~ 16276552 (-) True G1262745
TU1442665 other downstream 594861 15989286 ~ 16035122 (-) True LOC110490929
TU1442531 other downstream 784842 15828351 ~ 15845141 (-) True LOC110489690
TU1442597 other downstream 822366 15806250 ~ 15807617 (-) True G1262503
TU1441760 other downstream 1123785 15505698 ~ 15506198 (-) True G1261796
TU1443617 other upstream 13890 16645644 ~ 16646417 (-) True G1263444
TU1444458 other upstream 830074 17461828 ~ 17462977 (-) True G1264199
TU1445577 other upstream 1552037 18183791 ~ 18184123 (-) True G1265249
TU1445798 other upstream 1944785 18576539 ~ 18580163 (-) False G1265456
TU1445796 other upstream 1944964 18576718 ~ 18579791 (-) False G1265456

Expression Profile