RNA id: TU1444424


Basic Information

Item Value
RNA id TU1444424
length 269
lncRNA type intronic
GC content 0.43
exon number 1
gene id G1264181
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 17379705 ~ 17379973 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttaccagtctcccagtccgtgctgatgaaaagcatccccatatcTTGAttctgcaaccaccatgcttcccgGTAGGAATGGTGTTAGACaggtgcctggttttctccagacatggcGTTTTGAAATTAGGCCAAAGAATATCATCAACCATTTTGGTCTCAAACCAGAGAATATTTTTCCTTATTCTTTTGTTTTTTCTGCAAATTCCAGGAATGCTGTCATGTGCCaatttctcaggagtggcttccatctggccactctccaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1444417 lncRNA downstream 6666 17372832 ~ 17373039 (-) True G1264174
TU1444414 lncRNA downstream 8684 17370391 ~ 17371021 (-) True G1264171
TU1444412 lncRNA downstream 11214 17368098 ~ 17368491 (-) True G1264169
TU1444411 lncRNA downstream 11833 17367507 ~ 17367872 (-) True G1264168
TU1444407 lncRNA downstream 14860 17364453 ~ 17364845 (-) True G1264164
TU1444426 lncRNA upstream 813 17380786 ~ 17381041 (-) True G1264183
TU1444509 lncRNA upstream 87116 17467089 ~ 17467366 (-) True G1264242
TU1444511 lncRNA upstream 88851 17468824 ~ 17469234 (-) False G1264243
TU1444513 lncRNA upstream 88851 17468824 ~ 17469152 (-) True G1264243
TU1444444 lncRNA upstream 92372 17472345 ~ 17551433 (-) False G1264198
XR_005036055.1 mRNA downstream 153265 17207282 ~ 17226440 (-) True actr3b
XM_021562502.2 mRNA downstream 153266 17207282 ~ 17226439 (-) False actr3b
XM_021562501.2 mRNA downstream 153267 17207282 ~ 17226438 (-) False actr3b
XM_036943911.1 mRNA downstream 155175 17207282 ~ 17224530 (-) False actr3b
XM_036943908.1 mRNA downstream 452940 16727633 ~ 16926765 (-) True LOC110489714
XM_021562504.2 mRNA upstream 96991 17476964 ~ 17517237 (-) False LOC110489717
XM_021562503.2 mRNA upstream 96991 17476964 ~ 17528010 (-) True LOC110489717
XM_021562512.2 mRNA upstream 281738 17661711 ~ 17728784 (-) False bcl2a
XM_021562510.2 mRNA upstream 281738 17661711 ~ 17728790 (-) False bcl2a
XM_021562511.2 mRNA upstream 281738 17661711 ~ 17728790 (-) True bcl2a
TU1443617 other downstream 733288 16645644 ~ 16646417 (-) True G1263444
TU1442865 other downstream 1103153 16276009 ~ 16276552 (-) True G1262745
TU1442665 other downstream 1344583 15989286 ~ 16035122 (-) True LOC110490929
TU1442531 other downstream 1534564 15828351 ~ 15845141 (-) True LOC110489690
TU1442597 other downstream 1572088 15806250 ~ 15807617 (-) True G1262503
TU1444458 other upstream 81855 17461828 ~ 17462977 (-) True G1264199
TU1445577 other upstream 803818 18183791 ~ 18184123 (-) True G1265249
TU1445798 other upstream 1196566 18576539 ~ 18580163 (-) False G1265456
TU1445796 other upstream 1196745 18576718 ~ 18579791 (-) False G1265456
TU1445799 other upstream 1196745 18576718 ~ 18580163 (-) True G1265456

Expression Profile