RNA id: TU1444451


Basic Information

Item Value
RNA id TU1444451
length 1112
lncRNA type read_through
GC content 0.39
exon number 3
gene id G1264198
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 17472345 ~ 17551433 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagcaacactccccatccaacctgacagagcttgagaggatctgctgggaagaatgggagaaatgcatgtatgccaagcttgtagcatcatacccaagaagactccgctgtaatcgctgctttaacaaagtactgagtaaagggtctgaatacttatgtaaatgtgattttagaataaggctgtaacatgaaaaagacaaggggtctgaatactttccaaaggcactgtacatattttcAGAAATTGATTCAAGTGTATTTTATGGCTTTTGGCGAATGCATTCTAAAGTCACGCTGTtactactgcctgtaaacacagtccagttcaaagtgaattatGCCAGGCCCATGTGGCAAACGGCTTAATTGCATATAAGCCTACGGCGCACCTGTCTGCGGAGACTCtggtcctggacaagacagattGTTTTATTTACTCTAGTGTCTAACTCTCTAAAAGCACAGCtgtttcccactctatattgctatagaattttcacaaatgccttactatACGTCATTCCCAAACTTTTatgaaaatgtaaaacaaaataatCTTCCTGGGGGTGTATGCGAACAGATTTCATGTTACAAAgctgtcagttccacttgaaTTACTATGACATAcagtatttaatttaattttgtaAAATTTTCTTTGGCAGAAACTTTCTATTGTACAAATATTTATCACTGGAATTTTGTTTTAAGTTATGTATTTGTCATACTTCTTTCAAACTGTtgatgggctctccaaccctggtcctggatagctaccctcctgtaggtttttttGCACCAACCCCAGTTTTAACTTCCGCTCtacaaccagctaattattagGGTTGGAGAGCCTTGGGCTACACTGCATTAGCTCTACTGACCAAGAGATCGACATTGTGTGCAGTCTATGGAAATCATGTTGAATAGGGTAAGTGGAAATGCAGGGATAGTCTTTCATTTCCCAGTCTCGGCTCACACTAGCCGTCTGTCCTGCACTGTTCTAGTGAGCTatgatttgtttttttttcttatctAAATGTACGCTGTGCAGTTGAGTAATTATCTTGCAAATGAGACAACCAAATAAATGTTAATTGAAGTATGAACAT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1444511 lncRNA downstream 3800 17468824 ~ 17469234 (-) False G1264243
TU1444513 lncRNA downstream 3882 17468824 ~ 17469152 (-) True G1264243
TU1444509 lncRNA downstream 5668 17467089 ~ 17467366 (-) True G1264242
TU1444426 lncRNA downstream 91993 17380786 ~ 17381041 (-) True G1264183
TU1444424 lncRNA downstream 93061 17379705 ~ 17379973 (-) True G1264181
TU1444560 lncRNA upstream 18776 17570209 ~ 17572134 (-) True G1264287
TU1444571 lncRNA upstream 33171 17584604 ~ 17584939 (-) True G1264298
TU1444583 lncRNA upstream 46302 17597735 ~ 17598034 (-) True G1264310
TU1444610 lncRNA upstream 90737 17642170 ~ 17642459 (-) True G1264335
TU1444615 lncRNA upstream 97721 17649154 ~ 17649356 (-) True G1264340
XR_005036055.1 mRNA downstream 246594 17207282 ~ 17226440 (-) True actr3b
XM_021562502.2 mRNA downstream 246595 17207282 ~ 17226439 (-) False actr3b
XM_021562501.2 mRNA downstream 246596 17207282 ~ 17226438 (-) False actr3b
XM_036943911.1 mRNA downstream 248504 17207282 ~ 17224530 (-) False actr3b
XM_036943908.1 mRNA downstream 546269 16727633 ~ 16926765 (-) True LOC110489714
XM_021562512.2 mRNA upstream 110278 17661711 ~ 17728784 (-) False bcl2a
XM_021562510.2 mRNA upstream 110278 17661711 ~ 17728790 (-) False bcl2a
XM_021562511.2 mRNA upstream 110278 17661711 ~ 17728790 (-) True bcl2a
LOC110489721 mRNA upstream 191216 17742649 ~ 17746298 (-) True LOC110489721
XM_021562514.2 mRNA upstream 199815 17751248 ~ 17756522 (-) True LOC110489722
TU1444458 other downstream 10057 17461828 ~ 17462977 (-) True G1264199
TU1443617 other downstream 826617 16645644 ~ 16646417 (-) True G1263444
TU1442865 other downstream 1196482 16276009 ~ 16276552 (-) True G1262745
TU1442665 other downstream 1437912 15989286 ~ 16035122 (-) True LOC110490929
TU1442531 other downstream 1627893 15828351 ~ 15845141 (-) True LOC110489690
TU1445577 other upstream 632358 18183791 ~ 18184123 (-) True G1265249
TU1445798 other upstream 1025106 18576539 ~ 18580163 (-) False G1265456
TU1445796 other upstream 1025285 18576718 ~ 18579791 (-) False G1265456
TU1445799 other upstream 1025285 18576718 ~ 18580163 (-) True G1265456
TU1446969 other upstream 1557126 19108559 ~ 19109357 (-) True G1266471

Expression Profile