RNA id: TU1445218


Basic Information

Item Value
RNA id TU1445218
length 585
lncRNA type intronic
GC content 0.46
exon number 1
gene id G1264927
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 18148211 ~ 18148795 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttactctggaccctgatctctcttttctgtccaaaaatgatgcagaaaaattaatccatgcttttgttacttctaggttagacgaatgcaatgctctactttccggctacccggataaagcactaaataaacttcagtcagtgttaaatacggctgctagaatcctgttGACtattactgctaacctacaaagcattacaatggcttgctcctacctatctttccgatttggtcctgccgtacatacctacacgtacgctacggtcacaagacgcaggcctcctaattgtccctagaatttctaagcaaacagctggaggcagggctttctcctatagagatccatttttatggaatggtctgcctacccatatgagagacacagactcggtctcaacctttaagtcttcattgaagactcatctcttcagtaggtcctatgattgagtgtagtctggcccaggagtgtgaaggtgaacggaaaggcactggagcaacgaaccgcccttgctgtctctgtctggccggttcccctctctccactgggattctctgcctctaaccctattacaggggctgagtcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1445217 lncRNA downstream 72 18147923 ~ 18148139 (-) True G1264926
TU1445215 lncRNA downstream 1066 18146352 ~ 18147145 (-) True G1264924
TU1445212 lncRNA downstream 3025 18144755 ~ 18145186 (-) True G1264921
TU1445211 lncRNA downstream 3582 18144424 ~ 18144629 (-) True G1264920
TU1445204 lncRNA downstream 10028 18137860 ~ 18138183 (-) True G1264913
TU1445222 lncRNA upstream 2651 18151446 ~ 18151738 (-) True G1264931
TU1445224 lncRNA upstream 5573 18154368 ~ 18154589 (-) True G1264933
TU1445226 lncRNA upstream 7606 18156401 ~ 18157149 (-) True G1264935
TU1445227 lncRNA upstream 9356 18158151 ~ 18158801 (-) True G1264936
TU1445228 lncRNA upstream 10158 18158953 ~ 18159308 (-) True G1264937
LOC118938947 mRNA downstream 50312 18096724 ~ 18097899 (-) True LOC118938947
XM_021562514.2 mRNA downstream 391689 17751248 ~ 17756522 (-) True LOC110489722
LOC110489721 mRNA downstream 401913 17742649 ~ 17746298 (-) True LOC110489721
XM_021562510.2 mRNA downstream 419421 17661711 ~ 17728790 (-) False bcl2a
XM_021562516.2 mRNA upstream 20927 18169722 ~ 18178814 (-) True cavin4b
XM_021562517.2 mRNA upstream 47280 18196075 ~ 18208500 (-) True LOC110489726
XM_036943920.1 mRNA upstream 126681 18275476 ~ 18287651 (-) False LOC110489728
XM_021562522.2 mRNA upstream 126681 18275476 ~ 18291709 (-) False LOC110489728
XM_021562524.2 mRNA upstream 126681 18275476 ~ 18291710 (-) False LOC110489728
TU1444458 other downstream 685234 17461828 ~ 17462977 (-) True G1264199
TU1443617 other downstream 1501794 16645644 ~ 16646417 (-) True G1263444
TU1442865 other downstream 1871659 16276009 ~ 16276552 (-) True G1262745
TU1442665 other downstream 2113089 15989286 ~ 16035122 (-) True LOC110490929
TU1442531 other downstream 2303070 15828351 ~ 15845141 (-) True LOC110489690
TU1445577 other upstream 34996 18183791 ~ 18184123 (-) True G1265249
TU1445798 other upstream 427744 18576539 ~ 18580163 (-) False G1265456
TU1445796 other upstream 427923 18576718 ~ 18579791 (-) False G1265456
TU1445799 other upstream 427923 18576718 ~ 18580163 (-) True G1265456
TU1446969 other upstream 959764 19108559 ~ 19109357 (-) True G1266471

Expression Profile