RNA id: TU1445599


Basic Information

Item Value
RNA id TU1445599
length 233
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G1265270
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 18211509 ~ 18211741 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcctgggaagcgcagcgtctgccaggagatttatcgcacaatccccccgtcgatgatGTGGTAATTGAGTcaccttctttttacagaaggcgagagccaaattggcatattctggggggatgcgcacggtggagacctggtctggactttccaccgtggtAGCACCAACGGCATCCCCTacacacctccccgagcactcttgcgaccaccccgtgagagccctctgttgatA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1445588 lncRNA downstream 15779 18195501 ~ 18195730 (-) True G1265260
TU1445233 lncRNA downstream 43993 18167310 ~ 18167516 (-) True G1264941
TU1445232 lncRNA downstream 45104 18166081 ~ 18166405 (-) True G1264940
TU1445229 lncRNA downstream 50710 18160284 ~ 18160799 (-) True G1264938
TU1445228 lncRNA downstream 52201 18158953 ~ 18159308 (-) True G1264937
TU1445600 lncRNA upstream 779 18212520 ~ 18212841 (-) True G1265271
TU1445643 lncRNA upstream 68989 18280730 ~ 18281251 (-) True G1265310
TU1445708 lncRNA upstream 223242 18434983 ~ 18436635 (-) True G1265371
TU1445792 lncRNA upstream 360204 18571945 ~ 18572166 (-) True G1265452
TU1445793 lncRNA upstream 361809 18573550 ~ 18574311 (-) True G1265453
XM_021562517.2 mRNA downstream 3009 18196075 ~ 18208500 (-) True LOC110489726
XM_021562516.2 mRNA downstream 32695 18169722 ~ 18178814 (-) True cavin4b
LOC118938947 mRNA downstream 113610 18096724 ~ 18097899 (-) True LOC118938947
XM_021562514.2 mRNA downstream 454987 17751248 ~ 17756522 (-) True LOC110489722
LOC110489721 mRNA downstream 465211 17742649 ~ 17746298 (-) True LOC110489721
XM_036943920.1 mRNA upstream 63735 18275476 ~ 18287651 (-) False LOC110489728
XM_021562522.2 mRNA upstream 63735 18275476 ~ 18291709 (-) False LOC110489728
XM_021562524.2 mRNA upstream 63735 18275476 ~ 18291710 (-) False LOC110489728
XM_036943919.1 mRNA upstream 63735 18275476 ~ 18291919 (-) False LOC110489728
XR_005036056.1 mRNA upstream 64125 18275866 ~ 18291714 (-) True LOC110489728
TU1445577 other downstream 27386 18183791 ~ 18184123 (-) True G1265249
TU1444458 other downstream 748532 17461828 ~ 17462977 (-) True G1264199
TU1443617 other downstream 1565092 16645644 ~ 16646417 (-) True G1263444
TU1442865 other downstream 1934957 16276009 ~ 16276552 (-) True G1262745
TU1442665 other downstream 2176387 15989286 ~ 16035122 (-) True LOC110490929
TU1445798 other upstream 364798 18576539 ~ 18580163 (-) False G1265456
TU1445796 other upstream 364977 18576718 ~ 18579791 (-) False G1265456
TU1445799 other upstream 364977 18576718 ~ 18580163 (-) True G1265456
TU1446969 other upstream 896818 19108559 ~ 19109357 (-) True G1266471
TU1447224 other upstream 1223277 19435018 ~ 19453770 (-) True G1266708

Expression Profile