RNA id: TU1445708


Basic Information

Item Value
RNA id TU1445708
length 1185
lncRNA type intronic
GC content 0.44
exon number 2
gene id G1265371
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 18434983 ~ 18436635 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggttagagacagagacatgtagcagCTTTAGGGAGAGACAGAGACATGTAGCAGctttagggagagacagagacatgtagcagctttagggagagacagagacatgtagcagctttagggagagacagagacatgtaggagctttagggagagacagagacatgtagcagctttaggttagagacagagacatgtagcagctttagattagagacagagacatgtagcagCTTTAGGGAGAGACATAGACATGTAGCAGCTTTagattagagacagagacatgtagcagctttagggaaagacagagacatgtagcagctttagattagagacagagacatgtagcatctttagggagagacagagacatgtagcaactttaggttagagacagagacatgtagcagctttagattagagacagagacatgtatcagctttagggagagacagagacatgtagtAGCTTTagattagagacagagacatgtagcagctttagggaaagacagagacatgtagcatctttagggagaaacagagatatGTAGCAGCTTTagattagagacagagacatgtagcaACCTTAGATTAGAGACCGAGACATGTAGCAGctttagggagagacagagacatgtagcagctctcgggagagacagagacatgtagaAGCTTTAGGGAGAGACCGAGACATGTAACAGTTTTAGGTTAGATACAGAGAAATGTAGCAGctttagggagagacagagacatgtagcagCTTTAGGGAGAGACCGAGACATGTAGCAGCTttagttagagacagagacatgtagcagCTTCAGGTTAGATACAGAGAAATGTAGCAGctttagggagagacagagacatgtagcagctttaggttagagacagagacatgtaggagctctcgggagagacagagacatgtagcagctttagggagaaacagagacatgtagcagctttagggagagagagacatgtagcagctttaggttagagacagagacatgtagcagctttagattagagacagaaacatgtagcagctttaggttagagacagagacatgtagcagctttaggttagagacagagacatgtagcagctttcggttagagacagagacatccaGCTGctttagggagagacagagacatgtagcagctttagggagaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1445643 lncRNA downstream 153732 18280730 ~ 18281251 (-) True G1265310
TU1445600 lncRNA downstream 222142 18212520 ~ 18212841 (-) True G1265271
TU1445599 lncRNA downstream 223242 18211509 ~ 18211741 (-) True G1265270
TU1445588 lncRNA downstream 239253 18195501 ~ 18195730 (-) True G1265260
TU1445233 lncRNA downstream 267467 18167310 ~ 18167516 (-) True G1264941
TU1445792 lncRNA upstream 135310 18571945 ~ 18572166 (-) True G1265452
TU1445793 lncRNA upstream 136915 18573550 ~ 18574311 (-) True G1265453
TU1445794 lncRNA upstream 138032 18574667 ~ 18574949 (-) True G1265454
TU1445808 lncRNA upstream 230431 18667066 ~ 18683212 (-) True G1265464
TU1445892 lncRNA upstream 298636 18735271 ~ 18735636 (-) True G1265547
XM_021562565.2 mRNA downstream 50877 18373431 ~ 18384106 (-) False LOC110489732
XM_021562566.2 mRNA downstream 50877 18373431 ~ 18384106 (-) False LOC110489732
XM_021562567.2 mRNA downstream 50877 18373431 ~ 18384106 (-) False LOC110489732
XM_021562568.2 mRNA downstream 50877 18373431 ~ 18384106 (-) True LOC110489732
XM_036943925.1 mRNA downstream 65749 18344424 ~ 18369234 (-) True unm_hu7910
XM_021562575.2 mRNA upstream 156361 18592996 ~ 18607504 (-) True LOC110489734
NM_001190941.1 mRNA upstream 182035 18618670 ~ 18680053 (-) True actriib
XM_036943979.1 mRNA upstream 350235 18786870 ~ 18848976 (-) False xylb
XM_036943978.1 mRNA upstream 350235 18786870 ~ 18849057 (-) False xylb
XR_005036057.1 mRNA upstream 350235 18786870 ~ 18849057 (-) False xylb
TU1445577 other downstream 250860 18183791 ~ 18184123 (-) True G1265249
TU1444458 other downstream 972006 17461828 ~ 17462977 (-) True G1264199
TU1443617 other downstream 1788566 16645644 ~ 16646417 (-) True G1263444
TU1442865 other downstream 2158431 16276009 ~ 16276552 (-) True G1262745
TU1442665 other downstream 2399861 15989286 ~ 16035122 (-) True LOC110490929
TU1445798 other upstream 139904 18576539 ~ 18580163 (-) False G1265456
TU1445796 other upstream 140083 18576718 ~ 18579791 (-) False G1265456
TU1445799 other upstream 140083 18576718 ~ 18580163 (-) True G1265456
TU1446969 other upstream 671924 19108559 ~ 19109357 (-) True G1266471
TU1447224 other upstream 998383 19435018 ~ 19453770 (-) True G1266708

Expression Profile