RNA id: TU1446877


Basic Information

Item Value
RNA id TU1446877
length 780
lncRNA type intronic
GC content 0.44
exon number 2
gene id G1266384
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 18958224 ~ 18959762 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGggaagagggagctggaggagacaTTAACTTACAGggaagagggagctggaggagacaTTAACTTACAGGggaagagggagctggaggagacaGTAACTTACAGGggaagagggagctggaggagacaTTAACTTACGGGGGAAGAGGCAGCAGGCAGCTGCCTCACCAGCACCACTCCAGTGCTGATGTTTATTTTAATAATTAGTCCTAATTGCATGTCCCGGTGCGAGATCAGAATGGCAAAAaactaatatgatacatttttcatgAGGTGCTCTGCTCGGGCAGAGTAGGGTTTTATCAGCCCTGTGTCTGTATGTGGTTGTTTTTATTCTATTTCATCTCATGTTATTTTTTGGGGGAACTAGTCCTTTAGAGGAGTATGTTGGTACAGTTTGTGCTGGACTGGTGTTCTACCTCGGTGAGGACGATTCTGATTGGCTTACAGCACCAGCGTAATGGGCACCTTTTCTGAAAAGGTTCCCAGAAGGCTATTTTGCTGCCTCCTTTCATGTCTAATAATGATGTGGATAGATATATATCTCTATTTTTAATAATGTGTCTCCTCTTTTGACCCGACAGGATCTGCCGCTGGGTTGTCATTTAAAGAGCTGACCTCCTAACCCTTTGGACCTTTCatgtcctctctttctttctctctcccaattcaatttaaggggctttattggcatgggaacacacatgtttacattgccaaagcaagtgaaatagataataaacaaaaggaCAAAAattgaaatgaacagtaaacactca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1446845 lncRNA downstream 38833 18918803 ~ 18919391 (-) False LOC110490935
TU1446846 lncRNA downstream 38833 18918913 ~ 18919391 (-) False LOC110490935
TU1446844 lncRNA downstream 38833 18918940 ~ 18919391 (-) True LOC110490935
TU1446806 lncRNA downstream 97958 18859726 ~ 18860266 (-) True G1266325
TU1446801 lncRNA downstream 107335 18850600 ~ 18850889 (-) True G1266320
TU1446904 lncRNA upstream 37212 18996974 ~ 18998548 (-) True G1266411
TU1446917 lncRNA upstream 56467 19016229 ~ 19083858 (-) False G1266424
TU1446918 lncRNA upstream 56467 19016229 ~ 19083858 (-) False G1266424
TU1446919 lncRNA upstream 56467 19016229 ~ 19083858 (-) True G1266424
TU1446955 lncRNA upstream 118394 19078156 ~ 19078815 (-) True G1266457
XM_021562585.2 mRNA downstream 41368 18882806 ~ 18916856 (-) False LOC110489739
XM_021562586.2 mRNA downstream 41368 18882806 ~ 18916856 (-) False LOC110489739
XM_021562587.2 mRNA downstream 41368 18882806 ~ 18916856 (-) True LOC110489739
XM_021562584.2 mRNA downstream 84000 18871226 ~ 18874224 (-) True crygn2
XM_036943980.1 mRNA downstream 109167 18832011 ~ 18849057 (-) True xylb
XM_021564356.2 mRNA upstream 276338 19236100 ~ 19237676 (-) True LOC110490936
XM_021562592.2 mRNA upstream 362263 19322025 ~ 19343200 (-) False LOC110489741
XM_021562593.2 mRNA upstream 362263 19322025 ~ 19351415 (-) False LOC110489741
XM_021562590.2 mRNA upstream 362263 19322025 ~ 19372405 (-) False LOC110489741
XM_021562591.2 mRNA upstream 362263 19322025 ~ 19372405 (-) True LOC110489741
TU1445798 other downstream 378061 18576539 ~ 18580163 (-) False G1265456
TU1445799 other downstream 378061 18576718 ~ 18580163 (-) True G1265456
TU1445796 other downstream 378433 18576718 ~ 18579791 (-) False G1265456
TU1445577 other downstream 774101 18183791 ~ 18184123 (-) True G1265249
TU1444458 other downstream 1495247 17461828 ~ 17462977 (-) True G1264199
TU1446969 other upstream 148797 19108559 ~ 19109357 (-) True G1266471
TU1447224 other upstream 475256 19435018 ~ 19453770 (-) True G1266708
TU1448004 other upstream 1308204 20267966 ~ 20268488 (-) True G1267414
TU1448043 other upstream 1330588 20290350 ~ 20290673 (-) True G1267452
TU1449275 other upstream 1998610 20958372 ~ 20960089 (-) True G1268555

Expression Profile