RNA id: TU1447445


Basic Information

Item Value
RNA id TU1447445
length 682
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G1266910
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 19708962 ~ 19709962 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGCACATTACACAGTAGTTTACCTGGTGGATACCCAGTGGCCTGCGATGTTGGGTGGCATATGCACTGAGATCTGTCCTCCATGGAGGTGCTTGAGCATGTAGTGACATTGGGAGGCAACAATAACGGCATGCCGATCATGCTGCTGCCCATGTTTCCTCCCCAAGGACCTGACACTGGCTCTTATGTCAGAGTGAAGCAGAGAGCCCTCACAACCACCTGTAGGAACATTGAAAAGAAAAGCAGTAGAGATAATCAATTTGATCAGTAACATTGTTAGTCTTGACTGAGACGACACTTTAAAAAAGATTTTAATTAGGTAAGAATCACTCCAATTTCCATGATAAAGTATTGTTCATCGTTAATGAATTGTCTTCCTTCCCATTTGAGCCGTTCGTCACCAACCGTTCATTCCAGAATAATCAAATAGATCATTGAAAATTCCGTTGTCAATCATTCTAAGAAACGTGGCTTGCTGCGCCGATACGAAATAAAACGAGTTCCTTTCAACAATTTAGGCTACCAATTCAGCAGTTCTTCAATGTTGCTCTTAGATAAATGTTATTCATTTTGTTATGTTTCCTCTATCCGATTTTTGTATTTTAAATGGACAGGCgcactcctctctgtcctctgtggCATAGTTGAAGAACACACACACGAGTAATATTTTCGTAGGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1447410 lncRNA downstream 46381 19659874 ~ 19662581 (-) True G1266880
TU1447348 lncRNA downstream 115784 19592891 ~ 19593178 (-) True G1266819
TU1447201 lncRNA downstream 281222 19410848 ~ 19427740 (-) True G1266686
TU1447061 lncRNA downstream 282113 19365612 ~ 19426849 (-) True G1266552
TU1446919 lncRNA downstream 625104 19016229 ~ 19083858 (-) True G1266424
TU1447432 lncRNA upstream 2748 19712710 ~ 19713025 (-) True G1266897
TU1447480 lncRNA upstream 49857 19759819 ~ 19761869 (-) True LOC110489749
TU1447487 lncRNA upstream 75081 19785043 ~ 19785261 (-) True G1266943
TU1447494 lncRNA upstream 83955 19793917 ~ 19802097 (-) False G1266949
TU1447495 lncRNA upstream 90992 19800954 ~ 19801548 (-) True G1266949
XM_021562590.2 mRNA downstream 336557 19322025 ~ 19372405 (-) False LOC110489741
XM_021562591.2 mRNA downstream 336557 19322025 ~ 19372405 (-) True LOC110489741
XM_021562593.2 mRNA downstream 357547 19322025 ~ 19351415 (-) False LOC110489741
XM_021562592.2 mRNA downstream 365762 19322025 ~ 19343200 (-) False LOC110489741
XM_021564356.2 mRNA downstream 471286 19236100 ~ 19237676 (-) True LOC110490936
XM_021562612.2 mRNA upstream 4346 19714308 ~ 19718519 (-) True LOC110489747
XM_021562619.2 mRNA upstream 50664 19760626 ~ 19768382 (-) False LOC110489749
XM_036944026.1 mRNA upstream 63489 19773451 ~ 19933165 (-) True LOC110490939
XM_021562622.2 mRNA upstream 235045 19945007 ~ 19950792 (-) True impa2
XM_021562624.2 mRNA upstream 254477 19964439 ~ 20015960 (-) False gnal
TU1447224 other downstream 255192 19435018 ~ 19453770 (-) True G1266708
TU1446969 other downstream 599605 19108559 ~ 19109357 (-) True G1266471
TU1445798 other downstream 1128799 18576539 ~ 18580163 (-) False G1265456
TU1448004 other upstream 558004 20267966 ~ 20268488 (-) True G1267414
TU1448043 other upstream 580388 20290350 ~ 20290673 (-) True G1267452
TU1449275 other upstream 1248410 20958372 ~ 20960089 (-) True G1268555
TU1450121 other upstream 2092725 21802687 ~ 21803352 (-) True G1269265
TU1452449 other upstream 4003393 23713355 ~ 23717459 (-) False G1271421

Expression Profile