RNA id: TU1447595


Basic Information

Item Value
RNA id TU1447595
length 516
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1267047
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 19941699 ~ 19942214 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATATAGATTTCATAACACTAGGTACAACCCATAggggggcgcacaattggcccagcgtcgtccgggttagggtttggccggggtaggccgtcattgtaaataataatttgttcttaactgacttgcctagttaaataaaggtaaaataaataaaaacaactgGATAGGCCTATAGGCCTTCTGGAAAGAGAATATCTCAGATGACAGTGACAGGTAGAAAGGTTACTGCTGTCTCGAATCCTTGTgacgtccctaccctaaaccctaaccttagcccttgCCCCCAGGGCTCTCCAATCCTGTCCCTGGAACACCCATAGTCTTTTTGGGAGATAGAAATGCCCAAAAGTTTAGAAAAATTACTTAAAGAAACCCAGACCTTGAAACTGAATCAATTATGTACTTTCTTTTAATATACATCTCCCGTTTGGCCTGTCTCTTGTTATGCAATTCACAGCAGCTCTGACAgatgtgttgacatgacaactgcGTCAGAGTTTTGAACAACCCTTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1447594 lncRNA downstream 590 19940825 ~ 19941109 (-) True G1267046
TU1447583 lncRNA downstream 12746 19928715 ~ 19928953 (-) True G1267035
TU1447526 lncRNA downstream 103972 19837390 ~ 19837727 (-) True G1266979
TU1447519 lncRNA downstream 109330 19832158 ~ 19832369 (-) True G1266972
TU1447512 lncRNA downstream 120678 19820812 ~ 19821021 (-) True G1266966
TU1447785 lncRNA upstream 8886 19951100 ~ 19951457 (-) True G1267208
TU1447858 lncRNA upstream 147605 20089819 ~ 20090930 (-) True G1267280
TU1447872 lncRNA upstream 175857 20118071 ~ 20118297 (-) True G1267293
TU1447892 lncRNA upstream 208279 20150493 ~ 20150701 (-) True G1267313
TU1447918 lncRNA upstream 235490 20177704 ~ 20177947 (-) True G1267331
XM_036944026.1 mRNA downstream 8534 19773451 ~ 19933165 (-) True LOC110490939
XM_021562619.2 mRNA downstream 173317 19760626 ~ 19768382 (-) False LOC110489749
XM_021562612.2 mRNA downstream 223180 19714308 ~ 19718519 (-) True LOC110489747
XM_021562590.2 mRNA downstream 569294 19322025 ~ 19372405 (-) False LOC110489741
XM_021562622.2 mRNA upstream 2793 19945007 ~ 19950792 (-) True impa2
XM_021562624.2 mRNA upstream 22225 19964439 ~ 20015960 (-) False gnal
XM_021562623.2 mRNA upstream 22225 19964439 ~ 20031093 (-) True gnal
XM_036944034.1 mRNA upstream 120878 20063092 ~ 20086064 (-) False sycp2l
XM_036944028.1 mRNA upstream 120878 20063092 ~ 20086934 (-) False sycp2l
TU1447224 other downstream 487929 19435018 ~ 19453770 (-) True G1266708
TU1446969 other downstream 832342 19108559 ~ 19109357 (-) True G1266471
TU1445798 other downstream 1361536 18576539 ~ 18580163 (-) False G1265456
TU1448004 other upstream 325752 20267966 ~ 20268488 (-) True G1267414
TU1448043 other upstream 348136 20290350 ~ 20290673 (-) True G1267452
TU1449275 other upstream 1016158 20958372 ~ 20960089 (-) True G1268555
TU1450121 other upstream 1860473 21802687 ~ 21803352 (-) True G1269265
TU1452449 other upstream 3771141 23713355 ~ 23717459 (-) False G1271421

Expression Profile