RNA id: TU1447785


Basic Information

Item Value
RNA id TU1447785
length 358
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G1267208
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 19951100 ~ 19951457 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctccagagcactcaggacctcagactggggtgaaggttcacattccaacaggacaacgactctaagcacacagccaagacaacgcaggagtggcttcaggacaagtctctgaatgtccttgagtgacccagccagagcccggacttgaacccgatctaccatttctggagagacctgagaatagctgtgcagcgatgctccccatccaacctgacagagcttgagaggatcggcagagaataatgggaaaaactccccaaatagaggtgtgccaagcttttagcgccatacccaagaagacttgaggctgtactgcgtaaggtgcttcaacaaagtactgagtaaagggtctgaatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1447595 lncRNA downstream 8886 19941699 ~ 19942214 (-) True G1267047
TU1447594 lncRNA downstream 9991 19940825 ~ 19941109 (-) True G1267046
TU1447583 lncRNA downstream 22147 19928715 ~ 19928953 (-) True G1267035
TU1447526 lncRNA downstream 113373 19837390 ~ 19837727 (-) True G1266979
TU1447519 lncRNA downstream 118731 19832158 ~ 19832369 (-) True G1266972
TU1447858 lncRNA upstream 138362 20089819 ~ 20090930 (-) True G1267280
TU1447872 lncRNA upstream 166614 20118071 ~ 20118297 (-) True G1267293
TU1447892 lncRNA upstream 199036 20150493 ~ 20150701 (-) True G1267313
TU1447918 lncRNA upstream 226247 20177704 ~ 20177947 (-) True G1267331
TU1447942 lncRNA upstream 257908 20209365 ~ 20209597 (-) True G1267352
XM_021562622.2 mRNA downstream 308 19945007 ~ 19950792 (-) True impa2
XM_036944026.1 mRNA downstream 17935 19773451 ~ 19933165 (-) True LOC110490939
XM_021562619.2 mRNA downstream 182718 19760626 ~ 19768382 (-) False LOC110489749
XM_021562612.2 mRNA downstream 232581 19714308 ~ 19718519 (-) True LOC110489747
XM_021562590.2 mRNA downstream 578695 19322025 ~ 19372405 (-) False LOC110489741
XM_021562624.2 mRNA upstream 12982 19964439 ~ 20015960 (-) False gnal
XM_021562623.2 mRNA upstream 12982 19964439 ~ 20031093 (-) True gnal
XM_036944034.1 mRNA upstream 111635 20063092 ~ 20086064 (-) False sycp2l
XM_036944028.1 mRNA upstream 111635 20063092 ~ 20086934 (-) False sycp2l
XM_036944029.1 mRNA upstream 111635 20063092 ~ 20086934 (-) False sycp2l
TU1447224 other downstream 497330 19435018 ~ 19453770 (-) True G1266708
TU1446969 other downstream 841743 19108559 ~ 19109357 (-) True G1266471
TU1445798 other downstream 1370937 18576539 ~ 18580163 (-) False G1265456
TU1448004 other upstream 316509 20267966 ~ 20268488 (-) True G1267414
TU1448043 other upstream 338893 20290350 ~ 20290673 (-) True G1267452
TU1449275 other upstream 1006915 20958372 ~ 20960089 (-) True G1268555
TU1450121 other upstream 1851230 21802687 ~ 21803352 (-) True G1269265
TU1452449 other upstream 3761898 23713355 ~ 23717459 (-) False G1271421

Expression Profile