RNA id: TU1447858


Basic Information

Item Value
RNA id TU1447858
length 440
lncRNA type antisense_over
GC content 0.51
exon number 2
gene id G1267280
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 20089819 ~ 20090930 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTTAATAGAGAGACCTGCAAACTTGTTACCTCTCAATTCAGAATATGAGCCCACAAACCTGGAAGAATATAGCTTTTCCATCTATTCTCCAGAAGTTGGTGACGGGATAGCCACTGTGTCCTCTGCATGGCATCAGCTCCAGGGCAGAGTTACAGCTGGGGCACAGCTTCTCTGGAGAACAACCActttgttgtttttgtcgtgCTTTGTCGCAGATAGCCGGTCGGAGCTGGAGTTTGCTTCCGTCAGCCAGCGTGCAATTTCGGCCACAGACTACCACGCCGAGGCAGGACTTCTTGAGAATCTGACAGTTGTGGTTGTTGGTGTTTCGCATGGCCCATCCGCTCAGGTGCCGCTGTGCGTTCTTATCCTCGCCGGTGTAGATGTAACGAACATACCCATCCGTCCACTCCTGGAAAGCGTCATACTGCTTTGTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1447785 lncRNA downstream 138362 19951100 ~ 19951457 (-) True G1267208
TU1447595 lncRNA downstream 147605 19941699 ~ 19942214 (-) True G1267047
TU1447594 lncRNA downstream 148710 19940825 ~ 19941109 (-) True G1267046
TU1447583 lncRNA downstream 160866 19928715 ~ 19928953 (-) True G1267035
TU1447526 lncRNA downstream 252092 19837390 ~ 19837727 (-) True G1266979
TU1447872 lncRNA upstream 27141 20118071 ~ 20118297 (-) True G1267293
TU1447892 lncRNA upstream 59563 20150493 ~ 20150701 (-) True G1267313
TU1447918 lncRNA upstream 86774 20177704 ~ 20177947 (-) True G1267331
TU1447942 lncRNA upstream 118435 20209365 ~ 20209597 (-) True G1267352
TU1447952 lncRNA upstream 126433 20217363 ~ 20217675 (-) True G1267362
XM_036944030.1 mRNA downstream 2630 20063092 ~ 20087189 (-) True sycp2l
XM_036944031.1 mRNA downstream 2807 20063092 ~ 20087012 (-) False sycp2l
XM_036944028.1 mRNA downstream 2885 20063092 ~ 20086934 (-) False sycp2l
XM_036944029.1 mRNA downstream 2885 20063092 ~ 20086934 (-) False sycp2l
XM_036944032.1 mRNA downstream 2885 20063092 ~ 20086934 (-) False sycp2l
XM_021562641.2 mRNA upstream 55353 20146283 ~ 20148723 (-) True tmem14ca
XR_002468618.2 mRNA upstream 465842 20556772 ~ 20566859 (-) True LOC110489759
XM_021562656.2 mRNA upstream 599941 20690871 ~ 20724923 (-) True bmp6
XM_021562661.2 mRNA upstream 638076 20729006 ~ 20752125 (-) False zgc:101569
XM_036944037.1 mRNA upstream 643271 20734201 ~ 20752125 (-) True zgc:101569
TU1447224 other downstream 636049 19435018 ~ 19453770 (-) True G1266708
TU1446969 other downstream 980462 19108559 ~ 19109357 (-) True G1266471
TU1445798 other downstream 1509656 18576539 ~ 18580163 (-) False G1265456
TU1448004 other upstream 177036 20267966 ~ 20268488 (-) True G1267414
TU1448043 other upstream 199420 20290350 ~ 20290673 (-) True G1267452
TU1449275 other upstream 867442 20958372 ~ 20960089 (-) True G1268555
TU1450121 other upstream 1711757 21802687 ~ 21803352 (-) True G1269265
TU1452449 other upstream 3622425 23713355 ~ 23717459 (-) False G1271421

Expression Profile