RNA id: TU1448004


Basic Information

Item Value
RNA id TU1448004
length 523
RNA type TUCP
GC content 0.46
exon number 1
gene id G1267414
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 20267966 ~ 20268488 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgccagtacatgtccatgccagtacatgtccagtcccgtctgaagtttgctagagagcatttggatgatccagaagaagattgggagaatgtcatatggtcagatgaaaccaaaatataactttttggtaaaaactcaactcgtcatgtttgaaggacaaagaatgctgagttgcatccaaagaacaccatacctactatgaagcatgggggtggaaacatcatgctttggggctgtttttctgcaaagggaccaggacgactgatctgtgtaaaggaaagaatgaatggggccatgtatcttgagattttgagtgaaaacctccttccatcagcaagggcattgaagatgaaacgtggctgggtctttcagcatgacaatgatcccaaacacaccgcccgggcaacaaaggagtggcttcgtaagaagcatttcaaggtcctggagtggcctagccagtctctagatctcaaccccatagaaaatctttggagggagttgaaagtccgtgttgcccagcaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1447987 lncRNA downstream 14858 20252901 ~ 20253108 (-) True G1267397
TU1447955 lncRNA downstream 47636 20220106 ~ 20220330 (-) True G1267365
TU1447952 lncRNA downstream 50291 20217363 ~ 20217675 (-) True G1267362
TU1447942 lncRNA downstream 58369 20209365 ~ 20209597 (-) True G1267352
TU1447918 lncRNA downstream 90019 20177704 ~ 20177947 (-) True G1267331
TU1448055 lncRNA upstream 34752 20303240 ~ 20303589 (-) True G1267464
TU1448057 lncRNA upstream 35286 20303774 ~ 20304051 (-) True G1267466
TU1448059 lncRNA upstream 36452 20304940 ~ 20305204 (-) True G1267468
TU1448103 lncRNA upstream 70404 20338892 ~ 20339157 (-) True G1267505
TU1448104 lncRNA upstream 71076 20339564 ~ 20339882 (-) True G1267506
XM_021562641.2 mRNA downstream 119243 20146283 ~ 20148723 (-) True tmem14ca
XM_036944030.1 mRNA downstream 180777 20063092 ~ 20087189 (-) True sycp2l
XM_036944031.1 mRNA downstream 180954 20063092 ~ 20087012 (-) False sycp2l
XM_036944028.1 mRNA downstream 181032 20063092 ~ 20086934 (-) False sycp2l
XM_036944029.1 mRNA downstream 181032 20063092 ~ 20086934 (-) False sycp2l
XR_002468618.2 mRNA upstream 288284 20556772 ~ 20566859 (-) True LOC110489759
XM_021562656.2 mRNA upstream 422383 20690871 ~ 20724923 (-) True bmp6
XM_021562661.2 mRNA upstream 460518 20729006 ~ 20752125 (-) False zgc:101569
XM_036944037.1 mRNA upstream 465713 20734201 ~ 20752125 (-) True zgc:101569
NM_001165041.1 mRNA upstream 484019 20752507 ~ 20760750 (-) False pdcd6
TU1447224 other downstream 814196 19435018 ~ 19453770 (-) True G1266708
TU1446969 other downstream 1158609 19108559 ~ 19109357 (-) True G1266471
TU1445798 other downstream 1687803 18576539 ~ 18580163 (-) False G1265456
TU1445799 other downstream 1687803 18576718 ~ 18580163 (-) True G1265456
TU1445796 other downstream 1688175 18576718 ~ 18579791 (-) False G1265456
TU1448043 other upstream 21862 20290350 ~ 20290673 (-) True G1267452
TU1449275 other upstream 689884 20958372 ~ 20960089 (-) True G1268555
TU1450121 other upstream 1534199 21802687 ~ 21803352 (-) True G1269265
TU1452449 other upstream 3444867 23713355 ~ 23717459 (-) False G1271421
TU1452450 other upstream 3444867 23713355 ~ 23717459 (-) False G1271421

Expression Profile