RNA id: TU1448043



Basic Information


Item Value
RNA id TU1448043
length 324
RNA type TUCP
GC content 0.45
exon number 1
gene id G1267452
representative True

Chromosome Information


Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 20290350 ~ 20290673 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacacagctcatcaccctgaacacagcatccccactgtcaaacatggtggtggcagcatcatggtttgggcctgcttttcttcagcacggacagggaagatggttaaaattgatgggaagatggatggagccaaatacaggaccattctggaagaaaacctgatggagtctgcaaaagacctgagactgggacggagatatgtcttccaacaagacaatgatccaaaacataaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1447987 lncRNA downstream 37242 20252901 ~ 20253108 (-) True G1267397
TU1447955 lncRNA downstream 70020 20220106 ~ 20220330 (-) True G1267365
TU1447952 lncRNA downstream 72675 20217363 ~ 20217675 (-) True G1267362
TU1447942 lncRNA downstream 80753 20209365 ~ 20209597 (-) True G1267352
TU1447918 lncRNA downstream 112403 20177704 ~ 20177947 (-) True G1267331
TU1448055 lncRNA upstream 12567 20303240 ~ 20303589 (-) True G1267464
TU1448057 lncRNA upstream 13101 20303774 ~ 20304051 (-) True G1267466
TU1448059 lncRNA upstream 14267 20304940 ~ 20305204 (-) True G1267468
TU1448103 lncRNA upstream 48219 20338892 ~ 20339157 (-) True G1267505
TU1448104 lncRNA upstream 48891 20339564 ~ 20339882 (-) True G1267506
XM_021562641.2 mRNA downstream 141627 20146283 ~ 20148723 (-) True tmem14ca
XM_036944030.1 mRNA downstream 203161 20063092 ~ 20087189 (-) True sycp2l
XM_036944031.1 mRNA downstream 203338 20063092 ~ 20087012 (-) False sycp2l
XM_036944032.1 mRNA downstream 203416 20063092 ~ 20086934 (-) False sycp2l
XR_002468618.2 mRNA upstream 266099 20556772 ~ 20566859 (-) True LOC110489759
XM_021562656.2 mRNA upstream 400198 20690871 ~ 20724923 (-) True bmp6
XM_021562661.2 mRNA upstream 438333 20729006 ~ 20752125 (-) False zgc:101569
XM_036944037.1 mRNA upstream 443528 20734201 ~ 20752125 (-) True zgc:101569
NM_001165041.1 mRNA upstream 461834 20752507 ~ 20760750 (-) False pdcd6
TU1448004 other downstream 21862 20267966 ~ 20268488 (-) True G1267414
TU1447224 other downstream 836580 19435018 ~ 19453770 (-) True G1266708
TU1446969 other downstream 1180993 19108559 ~ 19109357 (-) True G1266471
TU1445798 other downstream 1710187 18576539 ~ 18580163 (-) False G1265456
TU1449275 other upstream 667699 20958372 ~ 20960089 (-) True G1268555
TU1450121 other upstream 1512014 21802687 ~ 21803352 (-) True G1269265
TU1452449 other upstream 3422682 23713355 ~ 23717459 (-) False G1271421
TU1452450 other upstream 3422682 23713355 ~ 23717459 (-) False G1271421
TU1452453 other upstream 3422682 23713355 ~ 23728939 (-) False G1271421

Expression Profile