RNA id: TU1449558


Basic Information

Item Value
RNA id TU1449558
length 995
lncRNA type intronic
GC content 0.50
exon number 2
gene id G1268772
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 21248017 ~ 21249031 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacagactgagacagagagatggagagagactgagagagacagagagagacagactgagacggagagagacagacggagagagacagactgagacggagagagacagactgagacggagagagacagacagacagagagcgacagactgagactctgagagagacagacagacagagacagacagactgagagagacagacagagatggagagacaggcaTAGactgagagacaggcagagacaggcagagagtaagagagacagagactgagagaggcagagactgagagtcagacagactgagagagacagagactgtgcGAGACTGAGAGTCAGACAGATAAACTGAGAGAGACAGGCGGAGGCTGAGAGAGACAGGCGGAGGCTGAGAGAGACAGGCGGAGGCTGAGAGAGACAGGCGGAGGCTGAGAGAGACAGGCGGAGGCTGAGAGAGACAGTCggaggctgagagagacagacggaggctgagagagacagacggagactgagggacatggagacagagagacagacagagactgagagagcccAAGACAGTTATTAATAGAGACTTAGACAGTtattgagagagacagatactgagagagagacagagaatgacagggataaagagacagagaatgagagaaagacagcgactgagagagagatagacagcgactgagagacagacagtgactgagagggagacagacagagacagagagacaggtagagactgagacagacagattgagagagatagagactgagaGCGACAGGGACAGTTattgtgagagacagagagagacaggctgagacagagagagacagactgagacagacttaGACTGAGacagacttacagtgccttgcgaaagtattcggcccccttgaactttgcaaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1449555 lncRNA downstream 1480 21245873 ~ 21246537 (-) False G1268771
TU1449557 lncRNA downstream 1480 21246159 ~ 21246537 (-) True G1268771
TU1449545 lncRNA downstream 13114 21234477 ~ 21234903 (-) True G1268764
TU1449544 lncRNA downstream 19272 21227904 ~ 21228745 (-) True G1268763
TU1449369 lncRNA downstream 261339 20981780 ~ 20986678 (-) True G1268618
TU1449507 lncRNA upstream 6232 21255263 ~ 21296389 (-) False LOC110489787
TU1449509 lncRNA upstream 6232 21255263 ~ 21296389 (-) True LOC110489787
TU1449526 lncRNA upstream 65964 21314995 ~ 21398420 (-) True G1268745
TU1449580 lncRNA upstream 134325 21383356 ~ 21383844 (-) True G1268793
TU1449757 lncRNA upstream 303613 21552644 ~ 21552950 (-) True G1268964
XM_036944057.1 mRNA downstream 40653 21174593 ~ 21207364 (-) False LOC110489787
XR_002468621.2 mRNA downstream 210515 21018809 ~ 21037502 (-) True LOC110489781
XR_002468620.2 mRNA downstream 240745 21002118 ~ 21007272 (-) True LOC110489780
XM_021562686.2 mRNA downstream 293210 20948900 ~ 20954807 (-) True ngdn
XM_021562679.2 mRNA downstream 341541 20904229 ~ 20906476 (-) True thtpa
XM_021562708.2 mRNA upstream 63188 21312219 ~ 21614730 (-) True kcnh2b
XM_036945611.1 mRNA upstream 368388 21617419 ~ 21680364 (-) True scospondin
XM_021562714.2 mRNA upstream 604669 21853700 ~ 21864112 (-) False LOC110489796
XM_036944058.1 mRNA upstream 604669 21853700 ~ 21864113 (-) False LOC110489796
XM_036944059.1 mRNA upstream 604669 21853700 ~ 21864113 (-) True LOC110489796
TU1449275 other downstream 287928 20958372 ~ 20960089 (-) True G1268555
TU1448043 other downstream 957344 20290350 ~ 20290673 (-) True G1267452
TU1448004 other downstream 979529 20267966 ~ 20268488 (-) True G1267414
TU1447224 other downstream 1794247 19435018 ~ 19453770 (-) True G1266708
TU1446969 other downstream 2138660 19108559 ~ 19109357 (-) True G1266471
TU1450121 other upstream 553656 21802687 ~ 21803352 (-) True G1269265
TU1452449 other upstream 2464324 23713355 ~ 23717459 (-) False G1271421
TU1452450 other upstream 2464324 23713355 ~ 23717459 (-) False G1271421
TU1452453 other upstream 2464324 23713355 ~ 23728939 (-) False G1271421
TU1452454 other upstream 2464324 23713355 ~ 23728939 (-) True G1271421

Expression Profile