RNA id: TU1449526


Basic Information

Item Value
RNA id TU1449526
length 575
lncRNA type sense_over
GC content 0.45
exon number 4
gene id G1268745
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 21314995 ~ 21398420 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagacatacagtgaaagagacagagacatacagggacagaaagggacagagacatacagggacagaaagagacagagacatacagggaaagagacatagacatacagggacagaaagggacagagatatacagggaaagagacagacatacagggaaaGAGACATATACATACAGGGAAAGATACATAGGCATacagggaaagggacagagacatacagggacagaaagggaaagagacatacagggaaagagacatagacatacagggaaagggacagagacatacagggaaagagacatagacatacagggacagaaagggacagagacatacagggaaagagacagagacatgcatGGAACgggacagagacatacagggacagaatgggacagagagatacagggaaagagacatagacatacagggaaagAGACATAGACATACAGCGAAAGAGACATAGACATACAGGGAAAGAGACGTAGACATACAGGGAAAGAGACagagacatacagggaaAGGGACATAGACATACAGGGAAAGGGACTAAGACATACAGGACAGAAAGAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1449507 lncRNA downstream 18606 21255263 ~ 21296389 (-) False LOC110489787
TU1449509 lncRNA downstream 18606 21255263 ~ 21296389 (-) True LOC110489787
TU1449558 lncRNA downstream 65964 21248017 ~ 21249031 (-) True G1268772
TU1449555 lncRNA downstream 68458 21245873 ~ 21246537 (-) False G1268771
TU1449557 lncRNA downstream 68458 21246159 ~ 21246537 (-) True G1268771
TU1449757 lncRNA upstream 154224 21552644 ~ 21552950 (-) True G1268964
TU1449759 lncRNA upstream 155635 21554055 ~ 21554300 (-) True G1268966
TU1449792 lncRNA upstream 202266 21600686 ~ 21600895 (-) True G1268998
TU1450015 lncRNA upstream 226400 21624820 ~ 21626499 (-) True G1269176
TU1450033 lncRNA upstream 291367 21689787 ~ 21691301 (-) True G1269191
XM_036944048.1 mRNA downstream 18269 21174593 ~ 21296726 (-) False LOC110489787
XM_036944049.1 mRNA downstream 18269 21174593 ~ 21296726 (-) False LOC110489787
XM_036944050.1 mRNA downstream 18269 21174593 ~ 21296726 (-) False LOC110489787
XM_036944051.1 mRNA downstream 18269 21174593 ~ 21296726 (-) False LOC110489787
XM_036944052.1 mRNA downstream 18269 21174593 ~ 21296726 (-) False LOC110489787
XM_036945611.1 mRNA upstream 218999 21617419 ~ 21680364 (-) True scospondin
XM_021562714.2 mRNA upstream 455280 21853700 ~ 21864112 (-) False LOC110489796
XM_036944058.1 mRNA upstream 455280 21853700 ~ 21864113 (-) False LOC110489796
XM_036944059.1 mRNA upstream 455280 21853700 ~ 21864113 (-) True LOC110489796
XM_021562725.2 mRNA upstream 817051 22215471 ~ 22297843 (-) False LOC110489804
TU1449275 other downstream 354906 20958372 ~ 20960089 (-) True G1268555
TU1448043 other downstream 1024322 20290350 ~ 20290673 (-) True G1267452
TU1448004 other downstream 1046507 20267966 ~ 20268488 (-) True G1267414
TU1447224 other downstream 1861225 19435018 ~ 19453770 (-) True G1266708
TU1446969 other downstream 2205638 19108559 ~ 19109357 (-) True G1266471
TU1450121 other upstream 404267 21802687 ~ 21803352 (-) True G1269265
TU1452449 other upstream 2314935 23713355 ~ 23717459 (-) False G1271421
TU1452450 other upstream 2314935 23713355 ~ 23717459 (-) False G1271421
TU1452453 other upstream 2314935 23713355 ~ 23728939 (-) False G1271421
TU1452454 other upstream 2314935 23713355 ~ 23728939 (-) True G1271421

Expression Profile