RNA id: TU1449580


Basic Information

Item Value
RNA id TU1449580
length 414
lncRNA type intronic
GC content 0.43
exon number 3
gene id G1268793
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 21383356 ~ 21383844 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagaacacagagaagagagaacagaacacagagaacagCATACACAAAACAGAGAAAagagaacagaacacagagaagagaacatagagaagagagaacagcacACAGAGAACAGCACACAGAGAACAGCCCACAGAGAACAGCACacagagaacagaacacagagaacagaacacagaacatagaaaacagaacagGAGGGACATGAAATACATGGCCTGTATTTCACACAGTGAACTGTGGACTATTTGTATGCATgctcacacacaaccacacatgcAGATAGCATACAACCACACATgcttgcagacacacacagagagagttagagagagagagagagactcagcatTCCTTCCTTTCAGGTGTTTTTTCTGGATCATAGGCATTTTCTCttgccatttctctctctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1449507 lncRNA downstream 86967 21255263 ~ 21296389 (-) False LOC110489787
TU1449509 lncRNA downstream 86967 21255263 ~ 21296389 (-) True LOC110489787
TU1449558 lncRNA downstream 134325 21248017 ~ 21249031 (-) True G1268772
TU1449555 lncRNA downstream 136819 21245873 ~ 21246537 (-) False G1268771
TU1449757 lncRNA upstream 168800 21552644 ~ 21552950 (-) True G1268964
TU1449759 lncRNA upstream 170211 21554055 ~ 21554300 (-) True G1268966
TU1449792 lncRNA upstream 216842 21600686 ~ 21600895 (-) True G1268998
TU1450015 lncRNA upstream 240976 21624820 ~ 21626499 (-) True G1269176
TU1450033 lncRNA upstream 305943 21689787 ~ 21691301 (-) True G1269191
XM_036944051.1 mRNA downstream 86630 21174593 ~ 21296726 (-) False LOC110489787
XM_036945611.1 mRNA upstream 233575 21617419 ~ 21680364 (-) True scospondin
XM_021562714.2 mRNA upstream 469856 21853700 ~ 21864112 (-) False LOC110489796
XM_036944058.1 mRNA upstream 469856 21853700 ~ 21864113 (-) False LOC110489796
XM_036944059.1 mRNA upstream 469856 21853700 ~ 21864113 (-) True LOC110489796
XM_021562725.2 mRNA upstream 831627 22215471 ~ 22297843 (-) False LOC110489804
TU1449275 other downstream 423267 20958372 ~ 20960089 (-) True G1268555
TU1448043 other downstream 1092683 20290350 ~ 20290673 (-) True G1267452
TU1448004 other downstream 1114868 20267966 ~ 20268488 (-) True G1267414
TU1447224 other downstream 1929586 19435018 ~ 19453770 (-) True G1266708
TU1446969 other downstream 2273999 19108559 ~ 19109357 (-) True G1266471
TU1450121 other upstream 418843 21802687 ~ 21803352 (-) True G1269265
TU1452449 other upstream 2329511 23713355 ~ 23717459 (-) False G1271421
TU1452450 other upstream 2329511 23713355 ~ 23717459 (-) False G1271421
TU1452453 other upstream 2329511 23713355 ~ 23728939 (-) False G1271421
TU1452454 other upstream 2329511 23713355 ~ 23728939 (-) True G1271421

Expression Profile