RNA id: TU1449037



Basic Information


Item Value
RNA id TU1449037
length 206
lncRNA type intronic
GC content 0.38
exon number 1
gene id G1268352
representative True

Chromosome Information


Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 21575670 ~ 21575875 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CACACAACTCTCTGACATAAACAGTTGCCTTCATGAGTTTCATTGACAAATATCAATGCAAAAAATGTGGTCCGCCAAAGCAGTAAAATCGGATAGAAATGAATTTATATGAATGCTGAAGGTACATAAATGGTTTGCTCACAGGGAAATGattatccaactagtcagtgacactgtttggagtttgtgacagcaactatgtgagc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1449023 lncRNA upstream 25527 21549845 ~ 21550143 (+) True G1268338
TU1448892 lncRNA upstream 199494 21374886 ~ 21376176 (+) True G1268212
TU1448855 lncRNA upstream 244245 21331076 ~ 21331425 (+) True G1268178
TU1448819 lncRNA upstream 286432 21287631 ~ 21289238 (+) True G1268151
TU1448744 lncRNA upstream 317820 21255261 ~ 21257850 (+) True G1268081
TU1449057 lncRNA downstream 25233 21601108 ~ 21602321 (+) True G1268371
TU1449061 lncRNA downstream 29225 21605100 ~ 21605407 (+) True G1268375
TU1449843 lncRNA downstream 81499 21657374 ~ 21658124 (+) False G1269040
TU1449844 lncRNA downstream 81499 21657374 ~ 21658124 (+) True G1269040
TU1449899 lncRNA downstream 151345 21727220 ~ 21727523 (+) True G1269086
XM_021562692.2 mRNA upstream 413855 21145517 ~ 21161815 (+) True LOC110489784
XM_021562693.2 mRNA upstream 445365 21107774 ~ 21130305 (+) True LOC110489785
LOC110490945 mRNA upstream 483235 21084390 ~ 21092435 (+) True LOC110490945
XM_021562691.2 mRNA upstream 501570 21055658 ~ 21074100 (+) True LOC110489782
XM_021562690.2 mRNA upstream 529106 21030657 ~ 21046564 (+) True LOC100136149
XM_021562718.2 mRNA downstream 72262 21648137 ~ 21649966 (+) True LOC110489799
XM_021562713.2 mRNA downstream 131861 21707736 ~ 21713134 (+) False aoc1
XM_021562709.2 mRNA downstream 131862 21707737 ~ 21713134 (+) False aoc1
XM_021562711.2 mRNA downstream 132182 21708057 ~ 21713134 (+) False aoc1
XM_021562710.2 mRNA downstream 132505 21708380 ~ 21713134 (+) True aoc1
TU1448574 other upstream 734272 20840295 ~ 20841398 (+) True G1267949
TU1446540 other upstream 1895565 19674113 ~ 19680105 (+) True epb41l3a
TU1446004 other upstream 2713159 18860111 ~ 18862511 (+) True LOC110489737
TU1442095 other upstream 5681506 15892968 ~ 15894164 (+) False mcmdc2
TU1441984 other upstream 5839253 15735930 ~ 15736417 (+) True G1261980
TU1449889 other downstream 210346 21786221 ~ 21794253 (+) False slc12a7b
TU1451171 other downstream 1556984 23132859 ~ 23136721 (+) True LOC110489812
TU1451615 other downstream 1801433 23377308 ~ 23377560 (+) True G1270643
TU1451627 other downstream 1830785 23406660 ~ 23408002 (+) True G1270652
TU1451648 other downstream 1869963 23445838 ~ 23450473 (+) True G1270669

Expression Profile