RNA id: TU1450121


Basic Information

Item Value
RNA id TU1450121
length 666
RNA type TUCP
GC content 0.50
exon number 1
gene id G1269265
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 21802687 ~ 21803352 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cccacacatgcggtgacctcacccattacaaccagcatgtccagagatacctctctcatcatcacccagtgcctgggcttacctccgctgtacccgcaccccaccatacccctgtctgcgcattatgccctgaatatattctaccatgcccagaaacctgctcctcttattctctgtctccaacgctctaggcgaccagttttgatagcctttagccgcactctcatactactccttctctgttccgcgggtgatgtggaggtaaacccaggccctgcatgtccccaggcaccctcatttgttgacttctgtgatcgaaaaagccttggtttcatgcatgtcaacatcagaagcctcctccctaagtttgttttactcactgctctagcacactctgctaaccctgatgtccttgctgtgtctgaatcctggctcaggaaggccaccaaaaattcagagatctccatacccaactataacatcttccgtcaagatagaactgccaaagggggaggagttgcagtctactgcagagatagcctgcaaagtaatgtcatactttccaggtccatacccaaacagttcgaactactaattttgaaaattactctctccagaaataagtctctcactgttgccgcctgctaccgacctccctcagctccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1450120 lncRNA downstream 2268 21799864 ~ 21800419 (-) True G1269264
TU1450112 lncRNA downstream 13849 21786522 ~ 21788838 (-) True G1269256
TU1450108 lncRNA downstream 24777 21776553 ~ 21777910 (-) True G1269252
TU1450035 lncRNA downstream 110489 21691814 ~ 21692198 (-) True G1269193
TU1450033 lncRNA downstream 111386 21689787 ~ 21691301 (-) True G1269191
TU1450130 lncRNA upstream 36917 21840269 ~ 21847859 (-) False G1269271
TU1450131 lncRNA upstream 36917 21840269 ~ 21867424 (-) True G1269271
TU1450195 lncRNA upstream 96677 21900029 ~ 21900228 (-) True G1269331
TU1450201 lncRNA upstream 100193 21903545 ~ 21904016 (-) True G1269337
TU1450256 lncRNA upstream 106474 21909826 ~ 21951219 (-) True G1269387
XM_036945611.1 mRNA downstream 122323 21617419 ~ 21680364 (-) True scospondin
XM_021562708.2 mRNA downstream 187957 21312219 ~ 21614730 (-) True kcnh2b
XM_036944048.1 mRNA downstream 505961 21174593 ~ 21296726 (-) False LOC110489787
XM_036944049.1 mRNA downstream 505961 21174593 ~ 21296726 (-) False LOC110489787
XM_036944050.1 mRNA downstream 505961 21174593 ~ 21296726 (-) False LOC110489787
XM_021562714.2 mRNA upstream 50348 21853700 ~ 21864112 (-) False LOC110489796
XM_036944058.1 mRNA upstream 50348 21853700 ~ 21864113 (-) False LOC110489796
XM_036944059.1 mRNA upstream 50348 21853700 ~ 21864113 (-) True LOC110489796
XM_021562725.2 mRNA upstream 412119 22215471 ~ 22297843 (-) False LOC110489804
XM_036944071.1 mRNA upstream 414897 22218249 ~ 22311271 (-) True LOC110489804
TU1449275 other downstream 842598 20958372 ~ 20960089 (-) True G1268555
TU1448043 other downstream 1512014 20290350 ~ 20290673 (-) True G1267452
TU1448004 other downstream 1534199 20267966 ~ 20268488 (-) True G1267414
TU1447224 other downstream 2348917 19435018 ~ 19453770 (-) True G1266708
TU1446969 other downstream 2693330 19108559 ~ 19109357 (-) True G1266471
TU1452449 other upstream 1910003 23713355 ~ 23717459 (-) False G1271421
TU1452450 other upstream 1910003 23713355 ~ 23717459 (-) False G1271421
TU1452453 other upstream 1910003 23713355 ~ 23728939 (-) False G1271421
TU1452454 other upstream 1910003 23713355 ~ 23728939 (-) True G1271421
TU1455797 other upstream 4242896 26046248 ~ 26048524 (-) False G1274532

Expression Profile