RNA id: TU1450194


Basic Information

Item Value
RNA id TU1450194
length 254
lncRNA type inter_gene
GC content 0.67
exon number 1
gene id G1269330
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 21899982 ~ 21900235 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gccggaggaaacaccgtgcacctggccaccttggctagcgtacactgcgcccagcccgccacaggagtcgctggtgcgcgatgagacaaggacacccctaccgaccaagccctccctaacccgggcgacgctaggccaattgtgcgtcgccccacggacctcccggtcgcggccggttacgacagagcctgggcgcgaatccaggactctgatggcacagctggcgctgcagtacagcgcccttaaccactgcg

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1449987 lncRNA upstream 14583 21885080 ~ 21885399 (+) True G1269171
TU1449977 lncRNA upstream 16649 21868159 ~ 21883333 (+) True G1269161
TU1449932 lncRNA upstream 96880 21802820 ~ 21803102 (+) True G1269119
TU1449930 lncRNA upstream 99572 21799863 ~ 21800410 (+) True G1269117
TU1449929 lncRNA upstream 100204 21799553 ~ 21799778 (+) True G1269116
TU1450197 lncRNA downstream 2366 21902601 ~ 21902802 (+) True G1269333
TU1450204 lncRNA downstream 5725 21905960 ~ 21906546 (+) True G1269340
TU1450218 lncRNA downstream 23110 21923345 ~ 21924507 (+) True G1269351
TU1450398 lncRNA downstream 226333 22126568 ~ 22130052 (+) True G1269513
TU1450516 lncRNA downstream 252943 22153178 ~ 22153796 (+) True lancl2
XM_021562724.2 mRNA upstream 55913 21804152 ~ 21844069 (+) True si:ch211-276f18.2
XM_021562706.2 mRNA upstream 105731 21729756 ~ 21794251 (+) False slc12a7b
XM_036944062.1 mRNA downstream 9397 21909632 ~ 21991990 (+) False LOC110489791
XM_036944060.1 mRNA downstream 9398 21909633 ~ 21991990 (+) False LOC110489791
XM_036944061.1 mRNA downstream 9398 21909633 ~ 21991990 (+) True LOC110489791
XM_036944063.1 mRNA downstream 96583 21996818 ~ 22054060 (+) False LOC110489805
XM_036944064.1 mRNA downstream 115152 22015387 ~ 22054060 (+) True LOC110489805
TU1449889 other upstream 105729 21786221 ~ 21794253 (+) False slc12a7b
TU1448574 other upstream 1058584 20840295 ~ 20841398 (+) True G1267949
TU1446540 other upstream 2219877 19674113 ~ 19680105 (+) True epb41l3a
TU1446004 other upstream 3037471 18860111 ~ 18862511 (+) True LOC110489737
TU1442095 other upstream 6005818 15892968 ~ 15894164 (+) False mcmdc2
TU1451171 other downstream 1232624 23132859 ~ 23136721 (+) True LOC110489812
TU1451615 other downstream 1477073 23377308 ~ 23377560 (+) True G1270643
TU1451627 other downstream 1506425 23406660 ~ 23408002 (+) True G1270652
TU1451648 other downstream 1545603 23445838 ~ 23450473 (+) True G1270669
TU1451811 other downstream 1766236 23666471 ~ 23695181 (+) True LOC110489839

Expression Profile