RNA id: TU1450398


Basic Information

Item Value
RNA id TU1450398
length 3449
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G1269513
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 22126568 ~ 22130052 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgattctctaaactatacttgcttgtttggtcacacaaactgaaattaggctaactattagaattttagcatcCAGGAAGTGGCAGAGTggtttctgcatagtgcatctttaacaaTTGTATGTTTTTGTTTGTATTGTAAGGTGCCCTATTGCCACACACCTAAACCTGCAAGCTGCATATTTATACCAATTTGGATAGTGCTCGTTTTGGTATGTTCAGTTTCCACAGTCTTGATGTCACTGCAGCTTATTGCTCTATTTCAGCATACTAAGCAAAACCTCATATTGGAGcatgtgtaaaaaaaatataatatttttttaaatggaaaaacTGTGTTGtcacaaaaaataaacagaaCCCCAAAAGATATGATTGTTTGGCAATAAGTGCACTTCTTCTGACCTAACTGCACGCGAACCTGTGTGGCAATAAGGTTGTCTTTGTTCTTTTATTGTTCCTTTGGATTTCTCTACAACAGTCTGCTGTTTGGATGCATTGTATTTATCTATGGGACACTGTGCTGCTACAAAATGTCTGCCTCTGTTCAGAAACCAAGATGAGGTCAGAGATGCTCTGTGAGAGCCCCAATTGGATGTACATAACATATCCCACATGCCTCTTATTAGAACTGTGCCATTATGTTTTTGTCTCTACATGATTCACCATTGGTGTTCCCCAAGGGTGAGTGCtgggatctctgtctctctctctctctctctctgtctctctctctctctgtctgatgcATCAGGTCAATCTTCATCCTGTAGAGAAATGCTGAAGTAGCCCTTTAAGCATTTTCTTATTATTTCTGATTAGGTGTGCTTCAGGAAATGAAGATCTGTACATTGTGTTGAACCTTGGAGATTGATTGTATGCTGTGCCATATAGTGATCTTAGTGATCCCTGCTACATACTGAAAATGTTCATTTGGAAGATTGAAGTTAGTGGAAATGAATGGACAGAGGGCGGGAAATGGTGTATATATCCAACTATTGATGTAGGACCTTAATTTGATCGCCCCATTGCAGGAAAACATGCCTGTAAATCAGCAGGACATGTTAAActtgtgtatttgaggtttaaaaagactTCTGATGTTTGCaattttcccttacaaaaaaaatgtaacaaccccTACAAAGATGTCGATTATTTATAATCCACGTAATaactcacatttcctgttgctgcaggattattttcctgttgtagcGAAATAGTCACattttaagatcctacatcttgtATATCTGTCTGGAAGCTCTGTCCTGCACAGTTGGTCAACAAAAATAGTTTGAACAAAAAGGAAGTGAAAGCTATCCCTAATATTAAGAGAGTAACAGATATCGCTGCTATGACACATGTTGAACAAATGGAAGGGGGAAAAAGCAGAAACGTCATCATGCTGAATTAGGTCCCCGTGCGTGTACATAATGCTAGATCTTAGAGCTTGTGTTTGTGGCAAGGTCAACTCCATTCTCTGggacataacaacaacaacactcaaACAGCAGCAGTTCAGCTGACTACTTCACTATCTATGCCTCCGTTGTCTACACTGGGCCAACGTTCATTCTGTGTCCGGACACATTTCTGTCTTAAAATCACCAGCAGCCTTTCTTTTCGTTTCTAAAATCAAAGGTGACTTATTCTTACATTAAGTGTAAAAAAACATGACATATCCAGGTATTCCCCTCTCAGTGATATGCAGGTCATTTTTCCTGGCCATACCAGCTTACAAGTTAACAGAAACAACGACAACAACCATACCGTTGCACCTCTGGTTTTATCATAAAAATAGGGCGACAGTCGCGGCTTTCGGGGTGGTCTAGAGTGGAAAAGTGGGGTTTTAGGTCTCGAAGCGCATTTAGTTTGCCTAGGGGTCTCTTGAGGTGCTACCAGTGTCCTTTTCAATACCCCCCACCAAAAAAACTTTTCTGTGCCTCCTTTCTGCTCATCTATTTCCACCCAAACACAGAAAGGAGACACAAGCCAGGATGTCCCAGGCAGCAGACTGCCAGCGGCCATCTTTGTTGCACCAGTTAGGAGGGTTGAAAGGGTGGGTGTTTGCTGTACGTGCCCTTTTGTGACCCAAACTCATATGATCTGGTAATTTTATCACTGGCAGACAGTCTGCTCAGACAGAAACTGACAAACAGTACTGTTGCTCGAAGCAAGGAGCAACACTAATGGTtgctatttttatttgatttaatttgtttTAAATTCATTATTTGATTTATTGTGTGATCTATTTGAGGCCAGGGAGATATGCAAATGATGACCCCCCCCACTGAGACTAAACTGACGTGAATGTATAAACTCAAATGGCTCTACCTTTCCCGAGAGAGGCCGCAAACCGGAGCACAATTTGCATAATTCCTTCAAAGGTCATGCATATGCCCAGTTGGCCTGCAAAACCACAACACACAGGTTCCTCTTATAGTTATGCACATTTTTTTGGTCAGCGTGGTCCCTTTCTTTGCTTTCCATTTTTCGCTCCTGTCCTGTTTGGGCACCGTTTTTCTGGTCTCTATCTATGCTACTATCTGGATCTTTTTTGCAGTACTGTCAGTACACTCAGTTGTGTCAGAAAGCACAGGCATCATCATTCTGGAGACATTTTTAGACTGCCAATTAATGCCCAAGGGAAAGAAAGCAATGGTTTGGGTCACAAAAGGGTCCTGCTTGCTAAATAAAAAGCCAATAGTGGTGCTCTCCACGGGTTCTATGTGGCTGCTGTAGTGAGACTGTTGTGTAAAAGCTTTATCGTGTTTTATTTGGTGCCTAAGTTAGACTATTCCCCCTTCTGTAATTTTTCCACCTAGAATGACGAGCTGCATGTGATTGTGTTCCAATGTATGCATCACTTGAtttataaataaacaaaaaaagctGGAAAAAAATATGAAGTGTAATTAACAGGATATTAGGTCATTCAAATCTAAAGAAAATACCTCCTGAAGACCAATGTGTTTTTACCTCAATGTATATATTCGATTTGTTTACGCCTAGTTAGATTTTTTTTGGTTTCTATGAAATGCTCATTTGAAGAATACACATTTGTCAATGGTACTTTTTTTGTCAATGGTATTGTGTTTTGTGGTGTTCAGTATATTCCTCTATTTACCATTATCACTTATTGACTTCTGTTCTGTCTCAAATGTAAATGCTTTACCAACGTCAAAACCTTAGTCTTTTCCAAGCCCCTCTGAGCTGTGTTTTAAAAATGTCTTGTTCTTTTTAAGTGGTCAAAAAGGAGGCTGCAAGGAGTGACCGGTTTCAGAATCGCCTGTGCCCCCTTCTGATTATTTCTAATGCATATGTATTGACTTCTTTTTAATAGTGTGCACCGAAGAATGAACGATCAACATAGGATAGCTTATGTTAAGTTCTAACATAGTTGGAGTACAAAGTGGTGTGAATAAAATACATTTCTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1450218 lncRNA upstream 202061 21923345 ~ 21924507 (+) True G1269351
TU1450204 lncRNA upstream 220022 21905960 ~ 21906546 (+) True G1269340
TU1450197 lncRNA upstream 223766 21902601 ~ 21902802 (+) True G1269333
TU1450194 lncRNA upstream 226333 21899982 ~ 21900235 (+) True G1269330
TU1449987 lncRNA upstream 241169 21885080 ~ 21885399 (+) True G1269171
TU1450516 lncRNA downstream 23126 22153178 ~ 22153796 (+) True lancl2
TU1450636 lncRNA downstream 186295 22316347 ~ 22350514 (+) True G1269737
TU1451093 lncRNA downstream 453512 22583564 ~ 22583772 (+) True G1270180
TU1451287 lncRNA downstream 692609 22822661 ~ 22823010 (+) True G1270359
TU1451313 lncRNA downstream 724715 22854767 ~ 22854996 (+) True G1270385
XM_021562716.2 mRNA upstream 1198 22061784 ~ 22125370 (+) False tgfbr1b
XM_036944065.1 mRNA upstream 1198 22061784 ~ 22125370 (+) False tgfbr1b
XM_036944066.1 mRNA upstream 1198 22061784 ~ 22125370 (+) True tgfbr1b
XM_036944063.1 mRNA upstream 72508 21996818 ~ 22054060 (+) False LOC110489805
XM_036944064.1 mRNA upstream 72508 22015387 ~ 22054060 (+) True LOC110489805
XM_036944068.1 mRNA downstream 22778 22152830 ~ 22215450 (+) False lancl2
XM_036944069.1 mRNA downstream 22983 22153035 ~ 22215450 (+) False lancl2
XM_036944067.1 mRNA downstream 23244 22153296 ~ 22215450 (+) False lancl2
XM_021562729.2 mRNA downstream 832760 22962812 ~ 23028566 (+) False LOC110489808
XM_021562730.2 mRNA downstream 832760 22962812 ~ 23028566 (+) False LOC110489808
TU1449889 other upstream 332315 21786221 ~ 21794253 (+) False slc12a7b
TU1448574 other upstream 1285170 20840295 ~ 20841398 (+) True G1267949
TU1446540 other upstream 2446463 19674113 ~ 19680105 (+) True epb41l3a
TU1446004 other upstream 3264057 18860111 ~ 18862511 (+) True LOC110489737
TU1442095 other upstream 6232404 15892968 ~ 15894164 (+) False mcmdc2
TU1451171 other downstream 1002807 23132859 ~ 23136721 (+) True LOC110489812
TU1451615 other downstream 1247256 23377308 ~ 23377560 (+) True G1270643
TU1451627 other downstream 1276608 23406660 ~ 23408002 (+) True G1270652
TU1451648 other downstream 1315786 23445838 ~ 23450473 (+) True G1270669
TU1451811 other downstream 1536419 23666471 ~ 23695181 (+) True LOC110489839

Expression Profile