RNA id: TU1451017


Basic Information

Item Value
RNA id TU1451017
length 237
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1270105
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 22537977 ~ 22538213 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTAGCAGAGGTAAACAGCAGACATGCTGCTTTTCCCCGGTAGATTGGCAAACAGAAACAATGAAAGATACATCTGATTTCCGCCATGATAGAACTGATTCTGTTACAAAAAGGTTTTCTGGTGAGTGTTTTGCATTGAACCGTGTCAGGTATTGTAGATTATTTGAAGTGGGTGGAAAGGAAATTAAATTTTTGCATCTGATCTTTGGTGTCAAAAACAATCCTTGGTTCCTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1451006 lncRNA downstream 5670 22532096 ~ 22532307 (-) True G1270094
TU1450992 lncRNA downstream 30542 22505954 ~ 22507435 (-) True G1270080
TU1450920 lncRNA downstream 168677 22368558 ~ 22369300 (-) True LOC110489790
TU1450832 lncRNA downstream 259164 22231519 ~ 22278813 (-) True G1269923
TU1450778 lncRNA downstream 356298 22154239 ~ 22181679 (-) True G1269870
TU1451031 lncRNA upstream 7052 22545265 ~ 22545471 (-) True G1270119
TU1451051 lncRNA upstream 12781 22550994 ~ 22551232 (-) True G1270139
TU1451094 lncRNA upstream 45315 22583528 ~ 22583835 (-) True G1270181
TU1451097 lncRNA upstream 47130 22585343 ~ 22585587 (-) True G1270184
TU1452053 lncRNA upstream 263102 22801315 ~ 22805575 (-) True G1271047
XM_021562698.2 mRNA downstream 91282 22367531 ~ 22446695 (-) False LOC110489790
XM_021562699.2 mRNA downstream 91282 22367531 ~ 22446695 (-) False LOC110489790
XM_021562723.2 mRNA downstream 178471 22312796 ~ 22359506 (-) True LOC110489802
XM_021562722.2 mRNA downstream 178478 22312796 ~ 22359499 (-) False LOC110489802
XM_036944071.1 mRNA downstream 226706 22218249 ~ 22311271 (-) True LOC110489804
XM_021562728.2 mRNA upstream 106128 22644341 ~ 22676386 (-) True LOC110489807
XR_005036304.1 mRNA upstream 257351 22795564 ~ 22796979 (-) True LOC118938910
XM_036945575.1 mRNA upstream 359899 22898112 ~ 22899241 (-) True LOC110490829
XM_021562733.2 mRNA upstream 369703 22907916 ~ 22955764 (-) False si:dkey-225n22.4
XM_021562735.2 mRNA upstream 369703 22907916 ~ 22955764 (-) True si:dkey-225n22.4
TU1450121 other downstream 734625 21802687 ~ 21803352 (-) True G1269265
TU1449275 other downstream 1577888 20958372 ~ 20960089 (-) True G1268555
TU1448043 other downstream 2247304 20290350 ~ 20290673 (-) True G1267452
TU1448004 other downstream 2269489 20267966 ~ 20268488 (-) True G1267414
TU1447224 other downstream 3084207 19435018 ~ 19453770 (-) True G1266708
TU1452449 other upstream 1175142 23713355 ~ 23717459 (-) False G1271421
TU1452450 other upstream 1175142 23713355 ~ 23717459 (-) False G1271421
TU1452453 other upstream 1175142 23713355 ~ 23728939 (-) False G1271421
TU1452454 other upstream 1175142 23713355 ~ 23728939 (-) True G1271421
TU1455797 other upstream 3508035 26046248 ~ 26048524 (-) False G1274532

Expression Profile