RNA id: TU1451287


Basic Information

Item Value
RNA id TU1451287
length 350
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G1270359
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 22822661 ~ 22823010 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGATGGAGTTGGCTGGGAATTGTGAATGCATGTGCAAGTAGATTGGCAGGTAGCCtaagagcgctgggccagtaaccgaaaggtcactggtcaatgtgaccttgagcaaggcacttaaccctaattgctcctgtaagtcgctctggataagcacGTCtgcaaaatgtaaaatgtaacgggcggcagggtagcctagtggttagagcgttggactagtaaccggaaggttgcgagttcaaacccccgagctgacaaggtacaaatctgtcgttctgcccctgaacaggcagttcccaggccgtcattgaaaataagaatttgttcttaactgacttgcctggttaaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1451093 lncRNA upstream 238889 22583564 ~ 22583772 (+) True G1270180
TU1450636 lncRNA upstream 472147 22316347 ~ 22350514 (+) True G1269737
TU1450516 lncRNA upstream 668865 22153178 ~ 22153796 (+) True lancl2
TU1450398 lncRNA upstream 692609 22126568 ~ 22130052 (+) True G1269513
TU1450218 lncRNA upstream 898154 21923345 ~ 21924507 (+) True G1269351
TU1451313 lncRNA downstream 31757 22854767 ~ 22854996 (+) True G1270385
TU1451314 lncRNA downstream 34225 22857235 ~ 22857716 (+) True G1270386
TU1451317 lncRNA downstream 37937 22860947 ~ 22861271 (+) True G1270389
TU1451318 lncRNA downstream 38577 22861587 ~ 22861852 (+) True G1270390
TU1451344 lncRNA downstream 77495 22900505 ~ 22900886 (+) True G1270414
XM_036944068.1 mRNA upstream 607211 22152830 ~ 22215450 (+) False lancl2
XM_036944069.1 mRNA upstream 607211 22153035 ~ 22215450 (+) False lancl2
XM_036944067.1 mRNA upstream 607211 22153296 ~ 22215450 (+) False lancl2
XM_036944065.1 mRNA upstream 697291 22061784 ~ 22125370 (+) False tgfbr1b
XM_021562729.2 mRNA downstream 139802 22962812 ~ 23028566 (+) False LOC110489808
XM_021562730.2 mRNA downstream 139802 22962812 ~ 23028566 (+) False LOC110489808
XM_021562731.2 mRNA downstream 139802 22962812 ~ 23028566 (+) False LOC110489808
XM_036944073.1 mRNA downstream 139802 22962812 ~ 23028566 (+) False LOC110489808
XM_036944074.1 mRNA downstream 139802 22962812 ~ 23028566 (+) False LOC110489808
TU1449889 other upstream 1028408 21786221 ~ 21794253 (+) False slc12a7b
TU1448574 other upstream 1981263 20840295 ~ 20841398 (+) True G1267949
TU1446540 other upstream 3142556 19674113 ~ 19680105 (+) True epb41l3a
TU1446004 other upstream 3960150 18860111 ~ 18862511 (+) True LOC110489737
TU1442095 other upstream 6928497 15892968 ~ 15894164 (+) False mcmdc2
TU1451171 other downstream 309849 23132859 ~ 23136721 (+) True LOC110489812
TU1451615 other downstream 554298 23377308 ~ 23377560 (+) True G1270643
TU1451627 other downstream 583650 23406660 ~ 23408002 (+) True G1270652
TU1451648 other downstream 622828 23445838 ~ 23450473 (+) True G1270669
TU1451811 other downstream 843461 23666471 ~ 23695181 (+) True LOC110489839

Expression Profile