RNA id: TU1452081


Basic Information

Item Value
RNA id TU1452081
length 1166
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1271074
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 22833205 ~ 22834370 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttgaaccattccattgtagattttgctttatgttttggatcattgtctttttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcggggtgatgagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaattgctttcttcttgccactcttccataaaggccagatttgtgcaatatatgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggcagcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctataaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacatttgatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattcgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaaggggtccgaatactttcgcaaggcactgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1452053 lncRNA downstream 27630 22801315 ~ 22805575 (-) True G1271047
TU1451097 lncRNA downstream 247618 22585343 ~ 22585587 (-) True G1270184
TU1451094 lncRNA downstream 249370 22583528 ~ 22583835 (-) True G1270181
TU1451051 lncRNA downstream 281973 22550994 ~ 22551232 (-) True G1270139
TU1451031 lncRNA downstream 287734 22545265 ~ 22545471 (-) True G1270119
TU1452089 lncRNA upstream 6116 22840486 ~ 22840912 (-) True G1271082
TU1452092 lncRNA upstream 9228 22843598 ~ 22843829 (-) True G1271085
TU1452213 lncRNA upstream 188935 23023305 ~ 23026796 (-) True G1271201
TU1452304 lncRNA upstream 341500 23175870 ~ 23176099 (-) True G1271285
TU1452306 lncRNA upstream 343622 23177992 ~ 23178191 (-) True G1271287
XR_005036304.1 mRNA downstream 36226 22795564 ~ 22796979 (-) True LOC118938910
XM_021562728.2 mRNA downstream 156819 22644341 ~ 22676386 (-) True LOC110489807
XM_021562698.2 mRNA downstream 386510 22367531 ~ 22446695 (-) False LOC110489790
XM_021562699.2 mRNA downstream 386510 22367531 ~ 22446695 (-) False LOC110489790
XM_021562723.2 mRNA downstream 473699 22312796 ~ 22359506 (-) True LOC110489802
XM_036945575.1 mRNA upstream 63742 22898112 ~ 22899241 (-) True LOC110490829
XM_021562733.2 mRNA upstream 73546 22907916 ~ 22955764 (-) False si:dkey-225n22.4
XM_021562735.2 mRNA upstream 73546 22907916 ~ 22955764 (-) True si:dkey-225n22.4
XM_021562737.2 mRNA upstream 226314 23060684 ~ 23122826 (-) False LOC110489811
XR_005036061.1 mRNA upstream 226314 23060684 ~ 23122826 (-) True LOC110489811
TU1450121 other downstream 1029853 21802687 ~ 21803352 (-) True G1269265
TU1449275 other downstream 1873116 20958372 ~ 20960089 (-) True G1268555
TU1448043 other downstream 2542532 20290350 ~ 20290673 (-) True G1267452
TU1448004 other downstream 2564717 20267966 ~ 20268488 (-) True G1267414
TU1447224 other downstream 3379435 19435018 ~ 19453770 (-) True G1266708
TU1452449 other upstream 878985 23713355 ~ 23717459 (-) False G1271421
TU1452450 other upstream 878985 23713355 ~ 23717459 (-) False G1271421
TU1452453 other upstream 878985 23713355 ~ 23728939 (-) False G1271421
TU1452454 other upstream 878985 23713355 ~ 23728939 (-) True G1271421
TU1455797 other upstream 3211878 26046248 ~ 26048524 (-) False G1274532

Expression Profile