RNA id: TU1451344


Basic Information

Item Value
RNA id TU1451344
length 382
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G1270414
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 22900505 ~ 22900886 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgCTAGAGTGAAATCTAGGAGCTAAAAAAGAACacaaaatacactacatggacaccccttaaaattatTGGATtctgacgggtgtataaaattgagcgcacagccatgcaaagtccgtagacaaacattggttGTAGAgcggctttactgaagagctcagtgactttcaacgtggcaccgtcataggatgccacctttccaacaagttagttcatcaactttctgccctgctagagctgccccggtcaactgtaagtgctgttattgtgaagtgaaaacgtctaggagcaacaacagctcagccgcaaagtggtaggcaacacaagctcaagaacgggaccaccgagtgctgaagcgcctaGTGTTGCAATACTGACTACCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1451318 lncRNA upstream 38653 22861587 ~ 22861852 (+) True G1270390
TU1451317 lncRNA upstream 39234 22860947 ~ 22861271 (+) True G1270389
TU1451314 lncRNA upstream 42789 22857235 ~ 22857716 (+) True G1270386
TU1451313 lncRNA upstream 45509 22854767 ~ 22854996 (+) True G1270385
TU1451287 lncRNA upstream 77495 22822661 ~ 22823010 (+) True G1270359
TU1451346 lncRNA downstream 2396 22903282 ~ 22903570 (+) True G1270416
TU1451376 lncRNA downstream 125975 23026861 ~ 23028564 (+) True LOC110489808
TU1451435 lncRNA downstream 148878 23049764 ~ 23049975 (+) True G1270489
TU1451487 lncRNA downstream 222068 23122954 ~ 23124405 (+) False G1270541
TU1451488 lncRNA downstream 222068 23122954 ~ 23127564 (+) True G1270541
XM_036944068.1 mRNA upstream 685055 22152830 ~ 22215450 (+) False lancl2
XM_036944069.1 mRNA upstream 685055 22153035 ~ 22215450 (+) False lancl2
XM_036944067.1 mRNA upstream 685055 22153296 ~ 22215450 (+) False lancl2
XM_036944065.1 mRNA upstream 775135 22061784 ~ 22125370 (+) False tgfbr1b
XM_021562729.2 mRNA downstream 61926 22962812 ~ 23028566 (+) False LOC110489808
XM_021562730.2 mRNA downstream 61926 22962812 ~ 23028566 (+) False LOC110489808
XM_021562731.2 mRNA downstream 61926 22962812 ~ 23028566 (+) False LOC110489808
XM_036944073.1 mRNA downstream 61926 22962812 ~ 23028566 (+) False LOC110489808
XM_036944074.1 mRNA downstream 61926 22962812 ~ 23028566 (+) False LOC110489808
TU1449889 other upstream 1106252 21786221 ~ 21794253 (+) False slc12a7b
TU1448574 other upstream 2059107 20840295 ~ 20841398 (+) True G1267949
TU1446540 other upstream 3220400 19674113 ~ 19680105 (+) True epb41l3a
TU1446004 other upstream 4037994 18860111 ~ 18862511 (+) True LOC110489737
TU1442095 other upstream 7006341 15892968 ~ 15894164 (+) False mcmdc2
TU1451171 other downstream 231973 23132859 ~ 23136721 (+) True LOC110489812
TU1451615 other downstream 476422 23377308 ~ 23377560 (+) True G1270643
TU1451627 other downstream 505774 23406660 ~ 23408002 (+) True G1270652
TU1451648 other downstream 544952 23445838 ~ 23450473 (+) True G1270669
TU1451811 other downstream 765585 23666471 ~ 23695181 (+) True LOC110489839

Expression Profile