RNA id: TU1451529


Basic Information

Item Value
RNA id TU1451529
length 3620
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G1270565
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 23212121 ~ 23218465 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGAAAATGTGCCTTTATTCTTggtaatatagtataatatagttgACAAAACCTCAGGCTTTGATTATGTCACTGGATAATTCAATGAGCTTTTCGTATCAATGGAGTAGGGGTATTTTTGCAACTTAGACTTTAAGCCACACTCAACAAAACTCTAAACCTCCATTTCACAAAATGTTAACATGCAATGTTAACAAACAGAAATTGTTgctaatttaaaaataaaaaaaaatcggaaatatcacatttacataagtattcagaccctttactcagtactatatTGAAGCACTTTTGGTAGCTATTACAAACTTGGcacccctgtatttggggagtgaacctttgccccaatctgaggtcctgagcgctctggagcaggttttcatcaaggatctctctgtactttgctccattcatctttggcTTGAtcctgcctttccaaatcatgtccaatcaattgaatttaccacaggtggactcaatcaagttgtagaaacatctcaaggatgatcaagggaaacaggatgcacctgaactcaatttcgaatctGATAGCAAAGAGGCTGAAatcctatgtaaataaggtttaaCTGTTTTTTATATTTGTAACAAATTTGCAAAAATTGAATTTCttattatggggttttgtgtgtagatggacgaggggaaaaaacaatttaatcaattttagaataaggctgtaacgtcacaacatgtggaggaagtcaaagggtctgaatactttctgaaggcactgtagcatcCTTTAAAATAAACGGAACATTTACCAATACAAATTATATTAGACAGTGTTATAATCCAAAACCCTCAGTAAAATATTTCAATGTTGCTAGTACACATTGCTGTTTTACCCACTCTCTTTCAGAAGTGTTACCAATGTAGACAGTGTGGTGTTTGGATCCAGTAGTTTAACCAGGGGAACATTCACACCTCTCTCTTGGAAGATGTAATTCTGCAGAGTCATAGCCAACATTGAGTCAATACCCAGTGCATACAGGGCAGTGTCGTCATTTACCTCATCTATGCTAACACTGGTGATCTCACTTAGCATAGCCCTGACATTCTCATGTGCTGTGGAAAGCTGTTGGACAATGGGTTCTGTCATGTTGGTGTTCTCAAGTTCTTGCTCGACCAAAGCTGTCAGCCTGCCTCTGAGAGATGCGTTTTGGGAGAGAACGTGGTTGCTCAGATTTCTGAAGTTGAATTTGCAAATGACTTGCTGTGGATTGTTCATCAACAAACACTTTTCAAGGGCCTCATGGACTTCTGACACCTCCATTATCATCATGCCCTTTGCCTCGAGAAACCTTTGGAAATTGTCTCTGTTCAACAAGAGACCGAGGTTCAAAGGCCCCCAGTTGATGGACTGTCCAGCAAGCCCAAGGTTTCGCCGATAATGAGAGAAAGTGTCCAGGAACGAATTGGCTGCTGCATAGTTAGACTGCGAAGCATTGCCAATGAACGAAGAGATGGAAGAGTAGCACACAAAGTAATCCAATTTGTTGTGCTGTGTTGCATAGTGAAGATTCAATGCCCCATTCACTTTGGGTCGAAGAACTTCATTGAAGTGTGATCGGTCAAGGGTTTCGATCAAAGCATCATGCAACACAGCTGCACTGTGAAACACTCCTTTGATTGGACAGGAGGGAAACATTTGTACAATTGCTGTGATTGCATTCACAACCTGCCCTGACACTGACACGTCACATTGGACACTCATGATAGACACCCCACATCTCCTCTGGAGAGTGTCCATCTCCAACTGCATCTCAGCTGACATAGGACTTCTGGAGAGGGTTGCAATGCATCCACCACCCCTGTGAGCAATGAACTTCACAGTCTCGAGTCCCAAACCCGAGAGCCCTCCGGTTACAATGTACACACAACTCTTCTTAAAGAGCTGCCGTGGTCTCATTAGCAAAGGGATATCAGATAGTGTATTTTCTGAATCCGCATGACCCAAAACTACTTGAGACACAGCCTTAGCTCTGAAGTAGGACTCACAGTGCGCAGTGGGCTGAGGATCTCTTGTGTCTGTCGATTGAAAGGTAATGGTTTGCAGAGATTGCGATACACCATCCAAATGTAATGACCTCAGCCAATTGTGGATCTTTGTTTTCTGTGCCTTTATATTGGCTCTCTGGAAAACATTTGACACGTAAAGTGTTTGGATGTGTGTATGTTCACTCTCATGTGCAAAAATGTTTGCTGAGGATGACACCTGGTTGTCACAGACTACAACAATATGCTTTGCTGTGGCTCCACTGCTTATTCTTACCACTACAGATGGATCAAAGGGAGGCAATACAACAAATGTATTACACTGATCAATGTTCAGGAGTTGTCCACTAAACTGGGGCAGAACGATGGCATTCCATCCTGATTTGTTTGCCGTTTGGGTTAAGACCTTCAGCAGAACAGAGTACTGCGGAAATAGATCACCTTCACTGCATCCTCAAGGGACAACAGACCAGAGCAGTGGGCAGCAGCAACCTCTCCAACAGAGTGGCCAAGAATTGCATCTGGTTTGATGCCCCAGTGCTTGAAGAGACTGGCAATGCCAACCTGAATGGCAAAGAGGAGGGGCTGAACAACATCTGGCTTGGTATAATCATCATTGTCAAAATCGTTTGCTATCTTTTGTGAGATGCCAGTACTTTTGTAATTCTGGAAGAGATTCTCAACCTCTCTGACCTTTTCTCTGAACACTGGCTCCTCTTTCAGAAGCTGCTTACACATTCCCCTGTAGGTCACTCCATTCCCACAGAACACAAAAATCAACCTGTTATCTGACCTTGATGGCTCAAGCTTCCTGTTCATCGCACACTGCAGTTGATTCTCTAAGTCGGGGACAGAGGACGTCATAAATGCTTTCCTGTATTTGTGTCTCAAATGGCTCCTCCTACATGCTGAGGTAAACATCAAAGTGAGTATGTCAGTTTGCTTATCTCTGCTAAGTCTTTGATATGTGTCTGTGATAGACATTGCCAATGAGTTCTCAGAGGCTGCAGACAAAACAAACAACTTGGGACTGTCATAAGTAGTCAATCTGGTGTTGTTGCCTTGCACATACTCCTTCACTATCGCATGAGCATTTGTCCCTCCAAACCCAAAGCTATTAATGCCAGCTAGCCTTGCCATGGGCTCTGTTTTTTCCCACTTCTCTGCTTTGATCGGAACTCTTACATTGAGAGCTTTGGCATCGATACTGGCACTATCCTCAGAGTAGAACAGTGAAGGGACAATGGTTTCATGCTTCATCATTAGGAGTACCTTGATTAGACCTGCCACTCCAGCTGCAGATTCTGTGTGTCCAATGTTGCCTTTCACAGAGCCGATGCGGAGTGTTTCTGAACCTGGAGGTCTGGCTTTGGCAATGACTTTGGAGATGCTGCCTGCTTCTATGGGATCCCCCACTGGAGTTCCAGTCCCATGAGCCTCTATGTACTGGACAGATGACAGGTCAGACTCTGCCGAGTAGATTCTGTGTAGTAGCTCTACCTGCTGGACCATGGATGGCTTGGTGATTGGAGTGACCGTGTGACCATCTTGGTTTACTGCAGTTCTTCTTACTATGCCCCATACCTTGTCAAAGTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1451562 lncRNA upstream 24167 23187703 ~ 23187954 (+) True G1270595
TU1451488 lncRNA upstream 84557 23122954 ~ 23127564 (+) True G1270541
TU1451487 lncRNA upstream 87716 23122954 ~ 23124405 (+) False G1270541
TU1451435 lncRNA upstream 162146 23049764 ~ 23049975 (+) True G1270489
TU1451376 lncRNA upstream 183557 23026861 ~ 23028564 (+) True LOC110489808
TU1451527 lncRNA downstream 41792 23260257 ~ 23260808 (+) True G1270563
TU1451611 lncRNA downstream 156325 23374790 ~ 23375273 (+) True G1270639
TU1451612 lncRNA downstream 156930 23375395 ~ 23375630 (+) True G1270640
TU1451619 lncRNA downstream 166289 23384754 ~ 23385062 (+) True G1270647
TU1451523 lncRNA downstream 179659 23398124 ~ 23399031 (+) False LOC110510445
XM_021562745.2 mRNA upstream 224 23204933 ~ 23211897 (+) True ptchd3a
XM_021562742.2 mRNA upstream 8762 23189104 ~ 23203359 (+) False LOC110489817
XM_021562743.2 mRNA upstream 8762 23189322 ~ 23203359 (+) False LOC110489817
XM_036944078.1 mRNA upstream 8762 23192966 ~ 23203359 (+) True LOC110489817
XM_021562740.2 mRNA upstream 39712 23162695 ~ 23172409 (+) False LOC110489814
XM_021562749.2 mRNA downstream 29630 23248095 ~ 23253786 (+) False mastl
XM_021562750.2 mRNA downstream 29631 23248096 ~ 23253786 (+) True mastl
XM_021562753.2 mRNA downstream 57048 23275513 ~ 23342095 (+) False LOC110489823
XM_021562755.2 mRNA downstream 57049 23275514 ~ 23342095 (+) False LOC110489823
XM_021562752.2 mRNA downstream 57050 23275515 ~ 23342095 (+) False LOC110489823
TU1451171 other upstream 75400 23132859 ~ 23136721 (+) True LOC110489812
TU1449889 other upstream 1417868 21786221 ~ 21794253 (+) False slc12a7b
TU1448574 other upstream 2370723 20840295 ~ 20841398 (+) True G1267949
TU1446540 other upstream 3532016 19674113 ~ 19680105 (+) True epb41l3a
TU1446004 other upstream 4349610 18860111 ~ 18862511 (+) True LOC110489737
TU1451615 other downstream 158843 23377308 ~ 23377560 (+) True G1270643
TU1451627 other downstream 188195 23406660 ~ 23408002 (+) True G1270652
TU1451648 other downstream 227373 23445838 ~ 23450473 (+) True G1270669
TU1451811 other downstream 448006 23666471 ~ 23695181 (+) True LOC110489839
TU1452905 other downstream 1027958 24246423 ~ 24250283 (+) True G1271852

Expression Profile