RNA id: TU1451612


Basic Information

Item Value
RNA id TU1451612
length 236
lncRNA type intronic
GC content 0.47
exon number 1
gene id G1270640
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 23375395 ~ 23375630 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tccttgagatgtttctacaacttgattggagtccacctgtggtaaattcaattgactcgacatttggaaaggcacacacacctgtctatataaggtcccacagtagacagtgcatgtcaaagggAAAGCCAAGCCAAGAGGCCAAAGGAATTGTCGGTAGAACTCCgagactggattgtgtcgaggcacagatctggggaagggtaccaaaacatttctgcagcattgaaggtccc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1451611 lncRNA upstream 122 23374790 ~ 23375273 (+) True G1270639
TU1451527 lncRNA upstream 114587 23260257 ~ 23260808 (+) True G1270563
TU1451529 lncRNA upstream 156930 23212121 ~ 23218465 (+) True G1270565
TU1451562 lncRNA upstream 187441 23187703 ~ 23187954 (+) True G1270595
TU1451488 lncRNA upstream 247831 23122954 ~ 23127564 (+) True G1270541
TU1451619 lncRNA downstream 9124 23384754 ~ 23385062 (+) True G1270647
TU1451523 lncRNA downstream 22494 23398124 ~ 23399031 (+) False LOC110510445
TU1451524 lncRNA downstream 22494 23398124 ~ 23399121 (+) True LOC110510445
TU1451624 lncRNA downstream 27449 23403079 ~ 23405314 (+) True G1270651
TU1451646 lncRNA downstream 64519 23440149 ~ 23445579 (+) True LOC110489836
XM_036944081.1 mRNA upstream 6583 23350408 ~ 23368812 (+) False LOC110489828
XM_021562772.2 mRNA upstream 6583 23350409 ~ 23368812 (+) True LOC110489828
XM_036944083.1 mRNA upstream 33300 23275530 ~ 23342095 (+) False LOC110489823
XM_036944099.1 mRNA downstream 11906 23387536 ~ 23399051 (+) False LOC110510445
XM_021562779.2 mRNA downstream 64212 23439842 ~ 23445587 (+) False LOC110489836
XM_036944101.1 mRNA downstream 82478 23458108 ~ 23658840 (+) False prex2
XM_036944100.1 mRNA downstream 82479 23458109 ~ 23658840 (+) True prex2
XR_005036067.1 mRNA downstream 291039 23666669 ~ 23835443 (+) False LOC110489839
TU1451171 other upstream 238674 23132859 ~ 23136721 (+) True LOC110489812
TU1449889 other upstream 1581142 21786221 ~ 21794253 (+) False slc12a7b
TU1448574 other upstream 2533997 20840295 ~ 20841398 (+) True G1267949
TU1446540 other upstream 3695290 19674113 ~ 19680105 (+) True epb41l3a
TU1446004 other upstream 4512884 18860111 ~ 18862511 (+) True LOC110489737
TU1451615 other downstream 1678 23377308 ~ 23377560 (+) True G1270643
TU1451627 other downstream 31030 23406660 ~ 23408002 (+) True G1270652
TU1451648 other downstream 70208 23445838 ~ 23450473 (+) True G1270669
TU1451811 other downstream 290841 23666471 ~ 23695181 (+) True LOC110489839
TU1452905 other downstream 870793 24246423 ~ 24250283 (+) True G1271852

Expression Profile