RNA id: TU1451842


Basic Information

Item Value
RNA id TU1451842
length 263
lncRNA type read_through
GC content 0.43
exon number 2
gene id G1270844
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 23712794 ~ 23716562 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATGAAAGGGAGGAAGTAAAATGATCTTTGCTAGAACCACTACTGTGGTGGTCTGGATCAGCTGATCATCCCAAATGCAGATGAATCAGctagttagttatGCTTCCAAAACAAGCTAACTAGTCTTTACTTGATTTAAATCTGTTCTGCTACTGACAGTCAAACTGCAGTTGCCCCTTTTCCTGTCCCTGATCCTGAGACGAGACATGCTAGCAACCCTAAGTAACCAACTACTGGCAGTATTCATTTCAAACTCACCACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1451647 lncRNA upstream 261300 23445838 ~ 23451494 (+) False G1270669
TU1451646 lncRNA upstream 267215 23440149 ~ 23445579 (+) True LOC110489836
TU1451624 lncRNA upstream 307480 23403079 ~ 23405314 (+) True G1270651
TU1451524 lncRNA upstream 313673 23398124 ~ 23399121 (+) True LOC110510445
TU1451523 lncRNA upstream 313763 23398124 ~ 23399031 (+) False LOC110510445
TU1451846 lncRNA downstream 4527 23721089 ~ 23723367 (+) True G1270848
TU1451847 lncRNA downstream 4726 23721288 ~ 23723683 (+) True G1270849
TU1451884 lncRNA downstream 64695 23781257 ~ 23804723 (+) True G1270885
TU1451895 lncRNA downstream 87463 23804025 ~ 23805261 (+) True G1270892
TU1452661 lncRNA downstream 122748 23839310 ~ 23839530 (+) True G1271616
XM_036944101.1 mRNA upstream 53954 23458108 ~ 23658840 (+) False prex2
XM_036944100.1 mRNA upstream 53954 23458109 ~ 23658840 (+) True prex2
XM_021562779.2 mRNA upstream 267207 23439842 ~ 23445587 (+) False LOC110489836
XM_036944099.1 mRNA upstream 313743 23387536 ~ 23399051 (+) False LOC110510445
XM_036944081.1 mRNA upstream 343982 23350408 ~ 23368812 (+) False LOC110489828
XR_005036305.1 mRNA downstream 140851 23857413 ~ 23904392 (+) True LOC118938911
XM_036944110.1 mRNA downstream 233870 23950432 ~ 24026310 (+) False sulf1
XM_036944106.1 mRNA downstream 233872 23950434 ~ 24027801 (+) False sulf1
XM_036944108.1 mRNA downstream 233872 23950434 ~ 24027801 (+) False sulf1
XM_036944109.1 mRNA downstream 233872 23950434 ~ 24027801 (+) False sulf1
TU1451811 other upstream 17613 23666471 ~ 23695181 (+) True LOC110489839
TU1451648 other upstream 262321 23445838 ~ 23450473 (+) True G1270669
TU1451627 other upstream 304792 23406660 ~ 23408002 (+) True G1270652
TU1451615 other upstream 335234 23377308 ~ 23377560 (+) True G1270643
TU1451171 other upstream 576073 23132859 ~ 23136721 (+) True LOC110489812
TU1452905 other downstream 529861 24246423 ~ 24250283 (+) True G1271852
TU1453311 other downstream 671850 24388412 ~ 24403661 (+) False G1272220
TU1453690 other downstream 1025341 24741903 ~ 24743805 (+) True G1272573
TU1453691 other downstream 1043317 24759879 ~ 24762965 (+) False chchd7
TU1453692 other downstream 1043317 24759879 ~ 24762923 (+) True chchd7

Expression Profile