RNA id: TU1456311


Basic Information

Item Value
RNA id TU1456311
length 1939
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G1275013
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 26562583 ~ 26564647 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATATTTTATTACTAAAAGTGGTGGTGCACTGAAGGTGCTCTTTCACATCTCAGTTCTTTGCTTAAATCACAATATGTTTTCCCTCAATGAGAAAAGAAAGAAATCAAACATGAAAATCTTTAACATGGAGAAAGACTGTGGCAACAATGGAATATATACAACATGGGAGGAGAACGAGGTGGCGGCTTTCACAGGCCGGCATTGTTCTGTGTTCTACACACAAGGCTCATACAGGAGGCACTTAAATCTGAGAGCCTATAGCCAGGaccgtgtcagagagagaggaggaaatatgTGAAACCGTTGGAGTCAGTGGGGCTGCTCTGTTCTGTAAAATAACACAATGACAGACCTTGAAATGGAACGGTCTTATTGTTCGAGGGGAGTACAGTACTACTGTTGAGTCCATTCCTTAAGCACAGGCCTGGGACCTGTGAAATGGGGATTGTGGTGCCATCATGTGGGACATCAATGCTGCTACGCACACACACTAGGTTACCATCCAATtggtgaatattctaaaatccacaaaaacaatatgcacatttccCCACCAGAGATATTTCCATCAAAATGACTTGTTCCAGATAAAAGGCTGAACGTGGTGTAGCGCAGTTCATTTAAATGTACAGAATAAGTTCAAttggtttccatcacattttcaactccaCTGATGGTTTTCGGCACAACAAAAGTTGCGTTATATAGCAAATGTACCCGCTCTGGTCTTAGTACGTGTGCTttagccaacagcttgcagatacagtgcggTTAGGCTACctacatgagattattatggataaaagtgagattatttgtatttgtcaaacggcagtcaagcatcaatcgtgtcaccagaataagaccctctaCATTTATtaggaaaggagcatcaagctcatcaccgtgcactttcaccccCATATGAAGTTCACCATAACTTATTTTATCTGTAGCCTATTTAACTGCATGCTTTCTCGAGTCGTAGTTGGAGGACAATCATTGCGTGACTGGTTATTATATAAGTTTctgtgggggggaaaaaaaacaaaaaggtTTCTGCCATTTCTCACGTAATGAATTTTACTGACAAAAACATCCCACCCTGTCTGGTGTTTTATTTTGCAGACATTTTGGAAAGTTCACCAACAAAAACGTGCCGTTTCCATCAGTCTTGACATTTTGTATCTAACGTGTACTTTCCTCGCATAAAAAGGTTGGCTGGAAACCTGGTTACAGAGAGCATTAACAGTACACAGGCTTATGCTAGACACATCTAGAGCACAACGAAGGGGTGCACATTCAAAAGCATGCACAGTCGCAGAATGAGCAATGTTGGTGATCATTAAAAATTTTACCGTTGAAGATGATGCATCTCCTTGATGCGACTAGTACACAACACACATTTCTAAACCGACCTACACTCAGATACTTCGACAATGCATTAGACATGTTTacaataattgtattattttaatGTCATTCACTTCAATGCCAGCTAAATAGAAATAGTCCATAACTGCTGCATCACCGCCGGAGGGGGGTGGGGTTTATGATAAATCAAAATGATTTTTTCTTCATGAATGTCTATTTTACTTATTTACAATTAAAACATACCAGGTTATCGTACCCATCATAATCAAAATAGGGGAAACAATTTATCCATAACATTCTCAATGGGGCGCCTGGTCTTGTATTTCTACCTGGCAAGGCTGGTCTGGTTGATGGTTGGGCTGGTTTGAGTTCAGATCTTCTCCTGGATGAAGGGGTGCTGCAGGGCCTGGTTGATGCTGATGCGTTTGGCAGGGTCCAGCATCAGCGTGCCGTCGATCAGGTCTTTTAGGACCAGGACCTTCTTCCTCTGCTCCTCGGGCAGCCGCTGGCCACCCACCATGTCACACAGCAAGTCCTTGGTGGGGTTGATTGTGCTCATCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1456270 lncRNA downstream 92688 26397313 ~ 26469895 (-) True G1274974
TU1456054 lncRNA downstream 194058 26368246 ~ 26368525 (-) True G1274768
TU1456043 lncRNA downstream 204181 26357907 ~ 26358402 (-) True G1274757
TU1456041 lncRNA downstream 205396 26356958 ~ 26357187 (-) True G1274755
TU1455993 lncRNA downstream 249209 26313099 ~ 26313374 (-) True G1274707
TU1456346 lncRNA upstream 1750 26566397 ~ 26567712 (-) False LOC110489888
TU1456354 lncRNA upstream 6959 26571606 ~ 26571883 (-) True G1275055
TU1456355 lncRNA upstream 7276 26571923 ~ 26572184 (-) True G1275056
TU1456422 lncRNA upstream 121375 26686022 ~ 26687096 (-) True G1275120
TU1456428 lncRNA upstream 130821 26695468 ~ 26695748 (-) True G1275126
XM_021562843.2 mRNA downstream 33967 26513679 ~ 26528616 (-) True pxdc1b
XM_021562844.2 mRNA downstream 33969 26513679 ~ 26528614 (-) False pxdc1b
XM_021562842.2 mRNA downstream 55653 26439995 ~ 26506930 (-) True LOC110489884
XM_036944148.1 mRNA downstream 55913 26439995 ~ 26506670 (-) False LOC110489884
XM_021562841.2 mRNA downstream 310153 26247142 ~ 26252430 (-) False LOC110489883
XM_036944151.1 mRNA upstream 1704 26566351 ~ 26670122 (-) False LOC110489888
XM_021562847.2 mRNA upstream 1704 26566351 ~ 26694581 (-) False LOC110489888
XM_021562848.2 mRNA upstream 1704 26566351 ~ 26694581 (-) False LOC110489888
XM_021562850.2 mRNA upstream 1704 26566351 ~ 26694581 (-) False LOC110489888
XM_021562851.2 mRNA upstream 155140 26719787 ~ 26723716 (-) True LOC110489889
TU1456314 other downstream 550 26554968 ~ 26562033 (-) True G1275016
TU1456313 other downstream 50508 26511525 ~ 26512075 (-) True G1275015
TU1455797 other downstream 514059 26046248 ~ 26048524 (-) False G1274532
TU1455798 other downstream 514115 26046248 ~ 26048468 (-) False G1274532
TU1452453 other downstream 2833644 23713355 ~ 23728939 (-) False G1271421
TU1456348 other upstream 5631 26570278 ~ 26571408 (-) True LOC110489888
TU1456686 other upstream 169566 26734213 ~ 26743607 (-) False LOC110489892
TU1456762 other upstream 272673 26837320 ~ 26841026 (-) True G1275434
TU1456819 other upstream 378648 26943295 ~ 26944164 (-) True LOC110489898
TU1457301 other upstream 664233 27228880 ~ 27231479 (-) True LOC110489905

Expression Profile